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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085228 through 18771 annotations produced 1 hits



(CG34199):

Annotation Number : HDC07468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085228
Gbrowse : chr2R:16175131-16175768 (+) // 100.0 //
Probeset : 1626674_at
Accessions : protein= NP_001097380;, nucleotide= NM_001103910;
FlyMine data for FBgn0085228.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.60None
Head0 ± 00 of 4 0.10None
Eye0 ± 00 of 4 0.16None
Thoracicoabdominal ganglion2 ± 00 of 4 0.50None
Salivary gland10 ± 20 of 4 2.28None
Crop7 ± 10 of 4 1.60None
Midgut9 ± 30 of 4 2.00None
Tubule3 ± 10 of 4 0.70None
Hindgut7 ± 10 of 4 1.70None
Heart0 ± 00 of 4 0.07None
Fat body5 ± 30 of 4 1.26None
Ovary5 ± 10 of 4 1.10None
Testis4 ± 10 of 4 0.90None
Male accessory glands11 ± 30 of 4 2.50None
Virgin spermatheca2 ± 10 of 4 0.60None
Mated spermatheca4 ± 10 of 4 0.87None
Adult carcass7 ± 10 of 4 1.60None
Larval CNS1 ± 10 of 4 0.29None
Larval Salivary gland1 ± 00 of 4 0.38None
Larval midgut5 ± 00 of 4 1.11None
Larval tubule7 ± 20 of 4 1.50None
Larval hindgut4 ± 10 of 4 0.88None
Larval fat body1 ± 00 of 4 0.30None
Larval trachea47 ± 374 of 410.28None
Larval carcass4 ± 10 of 4 1.02None
S2 cells (growing)2 ± 10 of 4 0.52None
Whole fly4 ± 20 of 4

Looking for FBgn0085228. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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