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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0085239 through 18771 annotations produced 1 hits


(CG34210):

Annotation Number : HDC04285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085239
Gbrowse : chr2R:19239145-19239493 (+) // 100.0 //
Probeset : 1630071_at
Accessions : protein= NP_001097430;, nucleotide= NM_001103960;
FlyMine data for FBgn0085239.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye7 ± 00 of 4 0.27Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland19 ± 40 of 4 0.71None
Crop2 ± 00 of 4 0.10Down
Midgut6 ± 30 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart5 ± 10 of 4 0.18Down
Fat body2 ± 00 of 4 0.09Down
Ovary1 ± 00 of 4 0.10Down
Testis416 ± 154 of 415.00Up
Male accessory glands9 ± 30 of 4 0.40Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca2 ± 00 of 4 0.09Down
Adult carcass8 ± 20 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.12Down
Larval midgut13 ± 00 of 4 0.47Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut7 ± 20 of 4 0.28Down
Larval fat body26 ± 141 of 4 1.00None
Larval trachea4 ± 30 of 4 0.16Down
Larval carcass11 ± 10 of 4 0.40Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly27 ± 14 of 4

Looking for FBgn0085239. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime