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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085243 through 18771 annotations produced 1 hits



(CG34214):

Annotation Number : HDC04542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085243
Gbrowse : chr2R:20552973-20553479 (-) // 100.0 //
Probeset : 1632572_at
Accessions : protein= NP_001097444; /// NP_611955;, nucleotide= NM_001103974; /// NM_138111;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0085243.
VDRC has 1 RNAi stocks for FBgn0085243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 1.20None
Head2 ± 10 of 4 1.30None
Eye1 ± 00 of 4 0.82None
Thoracicoabdominal ganglion2 ± 10 of 4 1.10None
Salivary gland8 ± 30 of 4 4.04None
Crop8 ± 20 of 4 4.20None
Midgut1 ± 00 of 4 0.80None
Tubule4 ± 00 of 4 2.30Up
Hindgut1 ± 00 of 4 0.60None
Heart3 ± 10 of 4 1.50None
Fat body13 ± 10 of 4 6.49Up
Ovary1 ± 00 of 4 0.90None
Testis1 ± 10 of 4 0.80None
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca5 ± 20 of 4 2.54None
Mated spermatheca6 ± 20 of 4 3.13None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS2 ± 10 of 4 1.04None
Larval Salivary gland1 ± 00 of 4 0.48None
Larval midgut11 ± 10 of 4 5.78Up
Larval tubule5 ± 20 of 4 2.80None
Larval hindgut2 ± 00 of 4 1.35None
Larval fat body5 ± 30 of 4 2.70None
Larval trachea3 ± 10 of 4 1.91None
Larval carcass4 ± 10 of 4 2.33None
S2 cells (growing)0 ± 00 of 4 0.46None
Whole fly2 ± 00 of 4

Looking for FBgn0085243. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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