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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085250 through 18771 annotations produced 1 hits



(CG34221):

Annotation Number : CT32060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085250
Gbrowse : chr2R:6085347-6085614 (-) // 100.0 //
Probeset : 1631275_at
Accessions : protein= NP_001097255;, nucleotide= NM_001103785;
FlyMine data for FBgn0085250.
VDRC has 1 RNAi stocks for FBgn0085250 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 0.90None
Head8 ± 11 of 4 0.90None
Eye5 ± 21 of 4 0.63None
Thoracicoabdominal ganglion9 ± 11 of 4 1.00None
Salivary gland20 ± 32 of 4 2.22Up
Crop9 ± 10 of 4 1.10None
Midgut11 ± 10 of 4 1.20None
Tubule8 ± 00 of 4 0.90Down
Hindgut7 ± 10 of 4 0.80None
Heart8 ± 12 of 4 0.99None
Fat body13 ± 42 of 4 1.48None
Ovary5 ± 11 of 4 0.60None
Testis8 ± 11 of 4 0.90None
Male accessory glands9 ± 21 of 4 1.00None
Virgin spermatheca11 ± 13 of 4 1.28None
Mated spermatheca12 ± 23 of 4 1.32None
Adult carcass11 ± 11 of 4 1.30None
Larval CNS7 ± 03 of 4 0.86None
Larval Salivary gland5 ± 10 of 4 0.55None
Larval midgut9 ± 20 of 4 1.09None
Larval tubule7 ± 00 of 4 0.80None
Larval hindgut8 ± 11 of 4 0.89None
Larval fat body10 ± 30 of 4 1.10None
Larval trachea12 ± 22 of 4 1.43None
Larval carcass12 ± 10 of 4 1.39None
S2 cells (growing)7 ± 10 of 4 0.78None
Whole fly9 ± 01 of 4

Looking for FBgn0085250. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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