FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085257 through 18771 annotations produced 1 hits

(CG34228):

Annotation Number : HDC05827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085257
Gbrowse : chr2R:7539446-7539782 (+) // 100.0 //
Probeset : 1640230_at
Accessions : protein= NP_001097274;, nucleotide= NM_001103804;
FlyMine data for FBgn0085257.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	262 ± 7	4 of 4	1.80	Up
Head	292 ± 26	4 of 4	1.90	Up
Eye	338 ± 12	4 of 4	2.26	Up
Thoracicoabdominal ganglion	412 ± 33	4 of 4	2.80	Up
Salivary gland	373 ± 15	4 of 4	2.49	Up
Crop	400 ± 33	4 of 4	2.70	Up
Midgut	163 ± 11	4 of 4	1.10	None
Tubule	257 ± 5	4 of 4	1.70	Up
Hindgut	484 ± 19	4 of 4	3.20	Up
Heart	312 ± 16	4 of 4	2.09	Up
Fat body	387 ± 46	4 of 4	2.58	Up
Ovary	125 ± 2	4 of 4	0.80	None
Testis	123 ± 5	4 of 4	0.80	None
Male accessory glands	180 ± 8	4 of 4	1.20	None
Virgin spermatheca	187 ± 2	4 of 4	1.25	Up
Mated spermatheca	195 ± 2	4 of 4	1.30	Up
Adult carcass	314 ± 16	4 of 4	2.10	Up
Larval CNS	183 ± 15	4 of 4	1.22	None
Larval Salivary gland	184 ± 16	4 of 4	1.23	None
Larval midgut	166 ± 10	4 of 4	1.11	None
Larval tubule	326 ± 12	4 of 4	2.20	Up
Larval hindgut	268 ± 8	4 of 4	1.79	Up
Larval fat body	77 ± 4	4 of 4	0.50	Down
Larval trachea	119 ± 17	4 of 4	0.80	None
Larval carcass	226 ± 22	4 of 4	1.51	Up
S2 cells (growing)	130 ± 6	4 of 4	0.87	None
Whole fly	149 ± 11	4 of 4

Looking for FBgn0085257. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720