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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085274 through 18771 annotations produced 2 hits



(CG34245):

Annotation Number : Stencil:3L:14843205:14836652:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085274
Gbrowse : chr3L:14880873-14887426 (-) // 100.0 //
Probeset : 1634228_at
Accessions : protein= NP_001097607;, nucleotide= NM_001104137;
FlyMine data for FBgn0085274.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.90None
Head2 ± 10 of 4 2.90None
Eye2 ± 10 of 4 2.73None
Thoracicoabdominal ganglion4 ± 10 of 4 4.30None
Salivary gland13 ± 50 of 413.45None
Crop4 ± 10 of 4 4.40None
Midgut3 ± 00 of 4 3.50None
Tubule3 ± 00 of 4 3.00Up
Hindgut2 ± 10 of 4 2.70None
Heart1 ± 00 of 4 1.85None
Fat body1 ± 10 of 4 1.35None
Ovary2 ± 00 of 4 2.40None
Testis2 ± 10 of 4 2.30None
Male accessory glands8 ± 20 of 4 8.80None
Virgin spermatheca2 ± 00 of 4 2.75None
Mated spermatheca4 ± 20 of 4 4.80None
Adult carcass8 ± 40 of 4 8.50None
Larval CNS2 ± 10 of 4 2.33None
Larval Salivary gland10 ± 10 of 410.90Up
Larval midgut1 ± 00 of 4 1.48None
Larval tubule3 ± 10 of 4 3.00None
Larval hindgut1 ± 00 of 4 1.65None
Larval fat body1 ± 00 of 4 1.70None
Larval trachea4 ± 21 of 4 4.25None
Larval carcass4 ± 20 of 4 4.35None
S2 cells (growing)3 ± 00 of 4 3.38None
Whole fly1 ± 00 of 4



(CG34245):

Annotation Number : S.C3L001861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:14886907-14891610 (-) // 100.0 //
Probeset : 1634335_at
Accessions : protein= NP_001097607;, nucleotide= NM_001104137;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye4 ± 20 of 4 0.39None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland12 ± 30 of 4 1.21None
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.11Down
Fat body3 ± 20 of 4 0.29Down
Ovary1 ± 00 of 4 0.10Down
Testis82 ± 34 of 4 8.00Up
Male accessory glands4 ± 20 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.13Down
Mated spermatheca0 ± 00 of 4 0.09Down
Adult carcass4 ± 10 of 4 0.50None
Larval CNS0 ± 00 of 4 0.08Down
Larval Salivary gland1 ± 00 of 4 0.14Down
Larval midgut6 ± 20 of 4 0.58None
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.26Down
Larval fat body9 ± 70 of 4 0.90None
Larval trachea4 ± 40 of 4 0.42None
Larval carcass1 ± 00 of 4 0.16Down
S2 cells (growing)1 ± 00 of 4 0.12Down
Whole fly10 ± 10 of 4

Looking for FBgn0085274. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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