FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085280 through 18771 annotations produced 1 hits

(CG34251):

Annotation Number : S.C3L002260
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085280
Gbrowse : chr3L:17666756-17676242 (+) // 100.0 //
Probeset : 1632921_at
Accessions : protein= NP_001097634; /// NP_001163461;, nucleotide= NM_001104164; /// NM_001169990;
FlyMine data for FBgn0085280.
VDRC has 1 RNAi stocks for FBgn0085280 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	1 of 4	2.90	Up
Head	6 ± 1	0 of 4	2.50	Up
Eye	3 ± 1	0 of 4	1.20	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	1.10	None
Salivary gland	12 ± 5	0 of 4	5.04	None
Crop	5 ± 2	2 of 4	2.30	None
Midgut	7 ± 1	1 of 4	2.90	Up
Tubule	2 ± 0	0 of 4	1.00	None
Hindgut	3 ± 1	0 of 4	1.50	None
Heart	1 ± 1	0 of 4	0.64	None
Fat body	6 ± 2	0 of 4	2.57	Up
Ovary	2 ± 0	0 of 4	0.90	None
Testis	2 ± 0	0 of 4	0.80	None
Male accessory glands	7 ± 3	0 of 4	3.00	None
Virgin spermatheca	3 ± 1	0 of 4	1.37	None
Mated spermatheca	3 ± 0	0 of 4	1.45	None
Adult carcass	5 ± 1	0 of 4	2.30	None
Larval CNS	10 ± 3	4 of 4	4.28	Up
Larval Salivary gland	8 ± 1	2 of 4	3.44	Up
Larval midgut	618 ± 49	4 of 4	242.64	Up
Larval tubule	4 ± 1	0 of 4	1.90	None
Larval hindgut	29 ± 3	4 of 4	11.64	Up
Larval fat body	13 ± 2	3 of 4	5.40	Up
Larval trachea	4 ± 3	0 of 4	1.69	None
Larval carcass	2 ± 0	0 of 4	0.89	None
S2 cells (growing)	2 ± 0	0 of 4	0.90	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0085280. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720