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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085282 through 18771 annotations produced 2 hits



(CG34253):

Annotation Number : S.C3L002302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085282
Gbrowse : chr3L:18079795-18080297 (-) // 100.0 //
Probeset : 1628992_at
Accessions : protein= NP_001097636;, nucleotide= NM_001104166;
FlyMine data for FBgn0085282.
VDRC has 1 RNAi stocks for FBgn0085282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.50Down
Head194 ± 64 of 4 5.00Up
Eye573 ± 474 of 414.61Up
Thoracicoabdominal ganglion18 ± 20 of 4 0.50Down
Salivary gland20 ± 70 of 4 0.53None
Crop22 ± 22 of 4 0.60Down
Midgut8 ± 10 of 4 0.20Down
Tubule9 ± 10 of 4 0.20Down
Hindgut27 ± 22 of 4 0.70Down
Heart903 ± 304 of 423.01Up
Fat body241 ± 244 of 4 6.15Up
Ovary2 ± 00 of 4 0.10Down
Testis27 ± 14 of 4 0.70Down
Male accessory glands10 ± 10 of 4 0.30Down
Virgin spermatheca195 ± 84 of 4 4.99Up
Mated spermatheca189 ± 194 of 4 4.82Up
Adult carcass167 ± 104 of 4 4.30Up
Larval CNS8 ± 30 of 4 0.21Down
Larval Salivary gland32 ± 30 of 4 0.84None
Larval midgut17 ± 30 of 4 0.43Down
Larval tubule51 ± 42 of 4 1.30None
Larval hindgut31 ± 50 of 4 0.80None
Larval fat body3290 ± 3994 of 483.80Up
Larval trachea30 ± 371 of 4 0.77None
Larval carcass32 ± 40 of 4 0.83None
S2 cells (growing)7 ± 20 of 4 0.18Down
Whole fly39 ± 34 of 4



(CG34253):

Annotation Number : S.C3L002302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085282
Gbrowse : chr3L:18079795-18080297 (-) // 100.0 //
Probeset : 1626303_s_at
Accessions : protein= NP_001097636;, nucleotide= NM_001104166;
FlyMine data for FBgn0085282.
VDRC has 1 RNAi stocks for FBgn0085282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 24 of 4 0.50Down
Head369 ± 84 of 4 7.30Up
Eye869 ± 884 of 417.29Up
Thoracicoabdominal ganglion24 ± 34 of 4 0.50Down
Salivary gland22 ± 33 of 4 0.45Down
Crop21 ± 04 of 4 0.40Down
Midgut9 ± 10 of 4 0.20Down
Tubule10 ± 11 of 4 0.20Down
Hindgut23 ± 34 of 4 0.50Down
Heart1336 ± 594 of 426.58Up
Fat body553 ± 914 of 411.01Up
Ovary3 ± 10 of 4 0.10Down
Testis31 ± 24 of 4 0.60Down
Male accessory glands12 ± 21 of 4 0.20Down
Virgin spermatheca624 ± 304 of 412.42Up
Mated spermatheca549 ± 624 of 410.92Up
Adult carcass240 ± 234 of 4 4.80Up
Larval CNS11 ± 24 of 4 0.23Down
Larval Salivary gland35 ± 54 of 4 0.70None
Larval midgut13 ± 22 of 4 0.26Down
Larval tubule44 ± 64 of 4 0.90None
Larval hindgut42 ± 64 of 4 0.85None
Larval fat body5873 ± 6464 of 4116.80Up
Larval trachea21 ± 252 of 4 0.43None
Larval carcass30 ± 34 of 4 0.61Down
S2 cells (growing)2 ± 10 of 4 0.05Down
Whole fly50 ± 34 of 4

Looking for FBgn0085282. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime