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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085285 through 18771 annotations produced 1 hits



(CG34256):

Annotation Number : HDC10908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085285
Gbrowse : chr3L:18981997-18982822 (-) // 100.0 //
Probeset : 1627674_at
Accessions : protein= NP_001097642;, nucleotide= NM_001104172;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0085285.
VDRC has 1 RNAi stocks for FBgn0085285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.30Down
Head3 ± 00 of 4 0.20Down
Eye2 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.30Down
Salivary gland5 ± 30 of 4 0.26Down
Crop5 ± 20 of 4 0.30Down
Midgut3 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 10 of 4 0.10Down
Heart4 ± 10 of 4 0.22Down
Fat body7 ± 31 of 4 0.40Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands2065 ± 264 of 4104.70Up
Virgin spermatheca6 ± 10 of 4 0.35Down
Mated spermatheca3 ± 00 of 4 0.15Down
Adult carcass15 ± 10 of 4 0.80None
Larval CNS3 ± 10 of 4 0.17Down
Larval Salivary gland5 ± 20 of 4 0.25Down
Larval midgut4 ± 10 of 4 0.22Down
Larval tubule3 ± 00 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body10 ± 10 of 4 0.50Down
Larval trachea2 ± 10 of 4 0.11Down
Larval carcass2 ± 00 of 4 0.13Down
S2 cells (growing)2 ± 00 of 4 0.10Down
Whole fly19 ± 24 of 4

Looking for FBgn0085285. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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