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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085288 through 18771 annotations produced 2 hits



(CG34259):

Annotation Number : HDC08032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085288
Gbrowse : chr3L:2026990-2028327 (+) // 100.0 //
Probeset : 1639804_at
Accessions : protein= NP_001097479;, nucleotide= NM_001104009;
FlyMine data for FBgn0085288.
VDRC has 1 RNAi stocks for FBgn0085288 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.90None
Head3 ± 10 of 4 2.90None
Eye1 ± 00 of 4 1.18None
Thoracicoabdominal ganglion1 ± 00 of 4 1.10None
Salivary gland8 ± 30 of 4 7.67None
Crop2 ± 10 of 4 2.20None
Midgut0 ± 00 of 4 0.50None
Tubule3 ± 00 of 4 3.40Up
Hindgut3 ± 10 of 4 3.30None
Heart0 ± 00 of 4 0.44None
Fat body7 ± 50 of 4 6.60None
Ovary0 ± 00 of 4 0.60None
Testis1 ± 00 of 4 1.60None
Male accessory glands3 ± 10 of 4 2.70None
Virgin spermatheca7 ± 00 of 4 6.82Up
Mated spermatheca10 ± 32 of 4 9.40None
Adult carcass3 ± 10 of 4 2.90None
Larval CNS5 ± 32 of 4 5.16None
Larval Salivary gland1 ± 00 of 4 1.47None
Larval midgut1 ± 00 of 4 0.89None
Larval tubule2 ± 10 of 4 2.00None
Larval hindgut1 ± 00 of 4 0.91None
Larval fat body0 ± 00 of 4 0.40None
Larval trachea1 ± 10 of 4 1.02None
Larval carcass0 ± 00 of 4 0.38None
S2 cells (growing)0 ± 00 of 4 0.40None
Whole fly1 ± 00 of 4



(CG34259):

Annotation Number : S.C3L000286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085288
Gbrowse : chr3L:2026990-2028112 (+) // 100.0 //
Probeset : 1625754_s_at
Accessions : protein= NP_001097479;, nucleotide= NM_001104009;
FlyMine data for FBgn0085288.
VDRC has 1 RNAi stocks for FBgn0085288 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head4 ± 12 of 4 1.10None
Eye2 ± 00 of 4 0.68None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40Down
Salivary gland10 ± 30 of 4 2.80None
Crop3 ± 00 of 4 0.90None
Midgut4 ± 10 of 4 1.20None
Tubule4 ± 00 of 4 1.10None
Hindgut3 ± 11 of 4 1.00None
Heart2 ± 00 of 4 0.52Down
Fat body6 ± 22 of 4 1.67None
Ovary3 ± 00 of 4 0.80None
Testis3 ± 00 of 4 0.80None
Male accessory glands5 ± 20 of 4 1.40None
Virgin spermatheca3 ± 00 of 4 0.82None
Mated spermatheca4 ± 11 of 4 1.13None
Adult carcass7 ± 00 of 4 1.80Up
Larval CNS4 ± 14 of 4 1.12None
Larval Salivary gland6 ± 12 of 4 1.54None
Larval midgut6 ± 11 of 4 1.65None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut2 ± 10 of 4 0.61None
Larval fat body5 ± 20 of 4 1.40None
Larval trachea2 ± 11 of 4 0.74None
Larval carcass4 ± 01 of 4 1.14None
S2 cells (growing)2 ± 00 of 4 0.54None
Whole fly3 ± 00 of 4

Looking for FBgn0085288. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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