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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0085289 through 18771 annotations produced 1 hits


Annotation Number : Stencil:3L:20627942:20633690:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085289
Gbrowse : chr3L:20706785-20708252 (+) // 99.7 //
Probeset : 1635571_at
Accessions : protein= NP_001097650;, nucleotide= NM_001104180;
FlyMine data for FBgn0085289.
VDRC has 1 RNAi stocks for FBgn0085289 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 1.90None
Head0 00 of 4 0.30None
Eye1 00 of 4 0.52None
Thoracicoabdominal ganglion4 10 of 4 1.80None
Salivary gland7 30 of 4 3.24None
Crop0 00 of 4 0.40None
Midgut2 10 of 4 1.00None
Tubule0 00 of 4 0.30Down
Hindgut0 00 of 4 0.10None
Heart1 00 of 4 0.54None
Fat body3 20 of 4 1.32None
Ovary1 00 of 4 0.80None
Testis1 00 of 4 0.60None
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.64None
Mated spermatheca2 00 of 4 1.17None
Adult carcass1 00 of 4 0.60None
Larval CNS0 00 of 4 0.32None
Larval Salivary gland1 00 of 4 0.57None
Larval midgut2 10 of 4 1.00None
Larval tubule1 00 of 4 0.40None
Larval hindgut0 00 of 4 0.16None
Larval fat body5 00 of 4 2.40Up
Larval trachea0 00 of 4 0.36None
Larval carcass2 00 of 4 0.99None
S2 cells (growing)0 00 of 4 0.33None
Whole fly2 00 of 4

Looking for FBgn0085289. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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