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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085290 through 18771 annotations produced 2 hits



(CG34261):

Annotation Number : CT29521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085290
Gbrowse : chr3L:21189837-21190511 (+) // 100.0 //
Probeset : 1638784_s_at
Accessions : protein= NP_001097655; /// NP_001097656;, nucleotide= NM_001104185; /// NM_001104186;
FlyMine data for FBgn0085290.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 0.20Down
Head5 ± 00 of 4 0.10Down
Eye6 ± 12 of 4 0.13Down
Thoracicoabdominal ganglion8 ± 11 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.13Down
Crop3 ± 10 of 4 0.10Down
Midgut7 ± 10 of 4 0.20Down
Tubule4 ± 10 of 4 0.10Down
Hindgut4 ± 00 of 4 0.10Down
Heart4 ± 11 of 4 0.10Down
Fat body6 ± 32 of 4 0.14Down
Ovary112 ± 24 of 4 2.40Up
Testis12 ± 14 of 4 0.30Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 21 of 4 0.11Down
Mated spermatheca3 ± 10 of 4 0.07Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS48 ± 34 of 4 1.04None
Larval Salivary gland7 ± 20 of 4 0.17Down
Larval midgut8 ± 01 of 4 0.19Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut7 ± 13 of 4 0.15Down
Larval fat body8 ± 21 of 4 0.20Down
Larval trachea19 ± 24 of 4 0.42Down
Larval carcass8 ± 20 of 4 0.18Down
S2 cells (growing)21 ± 24 of 4 0.46Down
Whole fly46 ± 14 of 4



(CG34261):

Annotation Number : CR_tc_GM10489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085290
Gbrowse : chr3L:21189946-21190840 (+) // 100.0 //
Probeset : 1633297_at
Accessions : protein= NP_001097655; /// NP_001097656;, nucleotide= NM_001104185; /// NM_001104186;
FlyMine data for FBgn0085290.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 04 of 4 0.20Down
Head8 ± 13 of 4 0.10Down
Eye16 ± 04 of 4 0.26Down
Thoracicoabdominal ganglion24 ± 14 of 4 0.40Down
Salivary gland12 ± 20 of 4 0.20Down
Crop6 ± 12 of 4 0.10Down
Midgut9 ± 10 of 4 0.10Down
Tubule12 ± 12 of 4 0.20Down
Hindgut12 ± 14 of 4 0.20Down
Heart19 ± 14 of 4 0.30Down
Fat body14 ± 44 of 4 0.22Down
Ovary159 ± 54 of 4 2.50Up
Testis30 ± 14 of 4 0.50Down
Male accessory glands9 ± 21 of 4 0.10Down
Virgin spermatheca29 ± 24 of 4 0.45Down
Mated spermatheca29 ± 24 of 4 0.46Down
Adult carcass7 ± 31 of 4 0.10Down
Larval CNS91 ± 64 of 4 1.42Up
Larval Salivary gland16 ± 34 of 4 0.25Down
Larval midgut13 ± 14 of 4 0.21Down
Larval tubule16 ± 04 of 4 0.30Down
Larval hindgut17 ± 14 of 4 0.27Down
Larval fat body16 ± 23 of 4 0.30Down
Larval trachea31 ± 44 of 4 0.48Down
Larval carcass17 ± 24 of 4 0.27Down
S2 cells (growing)43 ± 14 of 4 0.68Down
Whole fly64 ± 54 of 4

Looking for FBgn0085290. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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