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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085298 through 18771 annotations produced 1 hits



(CG34269):

Annotation Number : S.C3L000065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085298
Gbrowse : chr3L:511171-528994 (+) // 100.0 //
Probeset : 1640776_at
Accessions : protein= NP_001097466;, nucleotide= NM_001103996;
FlyMine data for FBgn0085298.
VDRC has 1 RNAi stocks for FBgn0085298 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.30Down
Head4 ± 10 of 4 0.30Down
Eye2 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland13 ± 40 of 4 0.78None
Crop4 ± 10 of 4 0.30Down
Midgut5 ± 10 of 4 0.30Down
Tubule4 ± 00 of 4 0.30Down
Hindgut5 ± 10 of 4 0.30Down
Heart2 ± 00 of 4 0.12Down
Fat body6 ± 10 of 4 0.36Down
Ovary1 ± 00 of 4 0.10Down
Testis163 ± 74 of 4 9.40Up
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.28Down
Mated spermatheca6 ± 10 of 4 0.37Down
Adult carcass11 ± 20 of 4 0.60None
Larval CNS6 ± 10 of 4 0.35Down
Larval Salivary gland5 ± 10 of 4 0.29Down
Larval midgut3 ± 10 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut7 ± 10 of 4 0.45Down
Larval fat body27 ± 91 of 4 1.60None
Larval trachea4 ± 20 of 4 0.25Down
Larval carcass2 ± 00 of 4 0.15Down
S2 cells (growing)4 ± 20 of 4 0.23Down
Whole fly17 ± 22 of 4

Looking for FBgn0085298. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime