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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085309 through 18771 annotations produced 1 hits



(CG34280):

Annotation Number : Stencil:3R:13230842:13228403:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054053 /// FBgn0085309
Gbrowse : chr3R:13228388-13230827 (-) // 100.0 //
Probeset : 1630059_at
Accessions : protein= NP_001097821; /// NP_001097822;, nucleotide= NM_001104351; /// NM_001104352;
FlyMine data for FBgn0054053 /// FBgn0085309.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30Down
Head1 ± 00 of 4 0.40None
Eye0 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.29Down
Crop0 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.20Down
Tubule0 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.32None
Fat body1 ± 10 of 4 0.48None
Ovary1 ± 00 of 4 0.30Down
Testis1 ± 00 of 4 0.50None
Male accessory glands3 ± 10 of 4 0.90None
Virgin spermatheca0 ± 00 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.33Down
Adult carcass4 ± 30 of 4 1.20None
Larval CNS0 ± 00 of 4 0.14Down
Larval Salivary gland2 ± 10 of 4 0.73None
Larval midgut1 ± 00 of 4 0.29Down
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.25Down
Larval fat body3 ± 10 of 4 1.00None
Larval trachea0 ± 00 of 4 0.22Down
Larval carcass1 ± 00 of 4 0.29Down
S2 cells (growing)0 ± 00 of 4 0.17Down
Whole fly3 ± 00 of 4

Looking for FBgn0085309. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime