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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085326 through 18771 annotations produced 1 hits



(CG34297):

Annotation Number : Stencil:3R:2573686:2572814:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085326
Gbrowse : chr3R:2572813-2573685 (-) // 100.0 //
Probeset : 1637157_at
Accessions : protein= NP_001097696;, nucleotide= NM_001104226;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0085326.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.20None
Head5 ± 10 of 4 4.30None
Eye2 ± 00 of 4 2.08None
Thoracicoabdominal ganglion3 ± 11 of 4 3.00None
Salivary gland8 ± 20 of 4 6.58None
Crop3 ± 01 of 4 2.50None
Midgut2 ± 10 of 4 2.30None
Tubule2 ± 00 of 4 2.10Up
Hindgut4 ± 02 of 4 3.40Up
Heart2 ± 00 of 4 1.90None
Fat body5 ± 31 of 4 4.04None
Ovary0 ± 00 of 4 0.20None
Testis2 ± 10 of 4 2.20None
Male accessory glands3 ± 20 of 4 2.90None
Virgin spermatheca3 ± 10 of 4 2.66None
Mated spermatheca2 ± 00 of 4 2.30None
Adult carcass4 ± 10 of 4 3.50None
Larval CNS3 ± 20 of 4 2.66None
Larval Salivary gland4 ± 10 of 4 3.32None
Larval midgut5 ± 20 of 4 4.50None
Larval tubule4 ± 00 of 4 3.70Up
Larval hindgut1 ± 00 of 4 1.30None
Larval fat body3 ± 10 of 4 2.70None
Larval trachea1 ± 00 of 4 0.86None
Larval carcass4 ± 11 of 4 3.20None
S2 cells (growing)3 ± 00 of 4 2.56None
Whole fly1 ± 00 of 4

Looking for FBgn0085326. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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