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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085330 through 18771 annotations produced 1 hits



(CG34301):

Annotation Number : HDC12547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085330
Gbrowse : chr3R:4599165-4599493 (+) // 100.0 //
Probeset : 1625304_s_at
Accessions : protein= NP_001097710;, nucleotide= NM_001104240;
FlyMine data for FBgn0085330.
VDRC has 1 RNAi stocks for FBgn0085330 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head27 ± 24 of 4 0.40Down
Eye13 ± 14 of 4 0.22Down
Thoracicoabdominal ganglion8 ± 21 of 4 0.10Down
Salivary gland51 ± 64 of 4 0.83None
Crop72 ± 44 of 4 1.20None
Midgut782 ± 534 of 412.80Up
Tubule59 ± 54 of 4 1.00None
Hindgut76 ± 54 of 4 1.20None
Heart3 ± 10 of 4 0.06Down
Fat body15 ± 42 of 4 0.25Down
Ovary1 ± 00 of 4 0.00Down
Testis24 ± 14 of 4 0.40Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca33 ± 04 of 4 0.54None
Mated spermatheca50 ± 54 of 4 0.82None
Adult carcass14 ± 40 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland30 ± 24 of 4 0.50None
Larval midgut4352 ± 1334 of 471.03Up
Larval tubule202 ± 114 of 4 3.30Up
Larval hindgut133 ± 64 of 4 2.17Up
Larval fat body11 ± 20 of 4 0.20Down
Larval trachea96 ± 74 of 4 1.58Up
Larval carcass40 ± 54 of 4 0.65None
S2 cells (growing)22 ± 14 of 4 0.36Down
Whole fly61 ± 104 of 4

Looking for FBgn0085330. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime