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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085331 through 18771 annotations produced 1 hits



(CG34302):

Annotation Number : HDC12756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085331
Gbrowse : chr3R:5648820-5650067 (-) // 100.0 //
Probeset : 1632425_at
Accessions : protein= NP_001097733;, nucleotide= NM_001104263;
FlyMine data for FBgn0085331.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head2 ± 10 of 4 0.40None
Eye5 ± 00 of 4 0.70None
Thoracicoabdominal ganglion4 ± 10 of 4 0.60None
Salivary gland19 ± 30 of 4 2.74Up
Crop4 ± 00 of 4 0.70None
Midgut3 ± 10 of 4 0.40None
Tubule3 ± 00 of 4 0.60Down
Hindgut6 ± 10 of 4 1.00None
Heart3 ± 10 of 4 0.48None
Fat body9 ± 50 of 4 1.27None
Ovary3 ± 10 of 4 0.50None
Testis54 ± 34 of 4 7.70Up
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca4 ± 10 of 4 0.59None
Mated spermatheca3 ± 10 of 4 0.50None
Adult carcass10 ± 50 of 4 1.50None
Larval CNS4 ± 10 of 4 0.59None
Larval Salivary gland6 ± 10 of 4 0.88None
Larval midgut6 ± 00 of 4 0.86None
Larval tubule4 ± 10 of 4 0.60None
Larval hindgut6 ± 10 of 4 0.92None
Larval fat body16 ± 52 of 4 2.30None
Larval trachea5 ± 30 of 4 0.71None
Larval carcass1 ± 00 of 4 0.19None
S2 cells (growing)8 ± 10 of 4 1.13None
Whole fly7 ± 20 of 4

Looking for FBgn0085331. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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