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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085341 through 18771 annotations produced 1 hits



/// /// (CG30058 /// CG34235 /// CG34312):

Annotation Number : CG30058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050058 /// FBgn0085264 /// FBgn0085341
Gbrowse : chr2R:9097859-9098882 (-) // 100.0 //
Probeset : 1635572_at
Accessions : protein= NP_001097299; /// NP_001097300; /// NP_725261;, nucleotide= NM_001103829; /// NM_001103830; /// NM_165972;
FlyMine data for FBgn0050058 /// FBgn0085264 /// FBgn0085341.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.14Down
Crop5 ± 20 of 4 0.10Down
Midgut5 ± 20 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.03Down
Fat body9 ± 60 of 4 0.17Down
Ovary0 ± 00 of 4 0.00Down
Testis804 ± 244 of 414.00Up
Male accessory glands27 ± 70 of 4 0.50Down
Virgin spermatheca9 ± 10 of 4 0.16Down
Mated spermatheca9 ± 30 of 4 0.16Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland3 ± 00 of 4 0.05Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body99 ± 483 of 4 1.70None
Larval trachea4 ± 71 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly57 ± 24 of 4

Looking for FBgn0085341. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime