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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085352 through 18771 annotations produced 1 hits



(CG34323):

Annotation Number : S.CX001339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085352
Gbrowse : chrX:11964520-11964839 (+) // 100.0 //
Probeset : 1625809_at
Accessions : protein= NP_001096962;, nucleotide= NM_001103492;
FlyMine data for FBgn0085352.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.20None
Head3 ± 10 of 4 2.00None
Eye2 ± 10 of 4 1.65None
Thoracicoabdominal ganglion3 ± 00 of 4 1.80None
Salivary gland9 ± 30 of 4 5.22None
Crop2 ± 10 of 4 1.50None
Midgut2 ± 00 of 4 1.30None
Tubule2 ± 00 of 4 1.50None
Hindgut4 ± 00 of 4 2.30None
Heart1 ± 00 of 4 0.88None
Fat body3 ± 20 of 4 2.08None
Ovary1 ± 00 of 4 1.00None
Testis10 ± 12 of 4 5.80Up
Male accessory glands3 ± 30 of 4 2.20None
Virgin spermatheca3 ± 20 of 4 2.17None
Mated spermatheca3 ± 10 of 4 1.68None
Adult carcass3 ± 00 of 4 2.00None
Larval CNS2 ± 11 of 4 1.44None
Larval Salivary gland3 ± 20 of 4 2.15None
Larval midgut3 ± 10 of 4 1.89None
Larval tubule2 ± 00 of 4 1.20None
Larval hindgut1 ± 00 of 4 0.99None
Larval fat body3 ± 10 of 4 1.80None
Larval trachea1 ± 20 of 4 1.03None
Larval carcass1 ± 00 of 4 0.99None
S2 cells (growing)19 ± 04 of 410.97Up
Whole fly1 ± 00 of 4

Looking for FBgn0085352. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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