Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0085353 through 18771 annotations produced 1 hits


(CG34324):

Annotation Number : CG12726
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085353
Gbrowse : chrX:13350745-13351415 (-) // 100.0 //
Probeset : 1624090_at
Accessions : protein= NP_001096972;, nucleotide= NM_001103502;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0085353.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.00Down
Head1025 ± 5914 of 4 0.30Down
Eye4 ± 11 of 4 0.00Down
Thoracicoabdominal ganglion9 ± 22 of 4 0.00Down
Salivary gland15 ± 50 of 4 0.01Down
Crop749 ± 7003 of 4 0.30None
Midgut6345 ± 584 of 4 2.20Up
Tubule4 ± 10 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart4 ± 00 of 4 0.00Down
Fat body4 ± 20 of 4 0.00Down
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.00Down
Mated spermatheca3 ± 00 of 4 0.00Down
Adult carcass171 ± 1442 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.00Down
Larval Salivary gland6 ± 30 of 4 0.00Down
Larval midgut19 ± 51 of 4 0.01Down
Larval tubule5 ± 20 of 4 0.00Down
Larval hindgut4 ± 11 of 4 0.00Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea3 ± 10 of 4 0.00Down
Larval carcass6 ± 10 of 4 0.00Down
S2 cells (growing)4 ± 10 of 4 0.00Down
Whole fly2949 ± 614 of 4

Looking for FBgn0085353. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime