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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085354 through 18771 annotations produced 1 hits



(CG34325):

Annotation Number : CG18358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085354
Gbrowse : chrX:16608479-16615440 (-) // 100.0 //
Probeset : 1633232_at
Accessions : protein= NP_001097003;, nucleotide= NM_001103533;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0085354.
VDRC has 3 RNAi stocks for FBgn0085354 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 24 of 4 0.40Down
Head217 ± 204 of 4 1.90Up
Eye210 ± 104 of 4 1.79Up
Thoracicoabdominal ganglion86 ± 34 of 4 0.70Down
Salivary gland395 ± 324 of 4 3.37Up
Crop1125 ± 174 of 4 9.60Up
Midgut175 ± 64 of 4 1.50Up
Tubule119 ± 204 of 4 1.00None
Hindgut578 ± 104 of 4 4.90Up
Heart32 ± 14 of 4 0.28Down
Fat body66 ± 124 of 4 0.56Down
Ovary43 ± 34 of 4 0.40Down
Testis361 ± 84 of 4 3.10Up
Male accessory glands688 ± 214 of 4 5.90Up
Virgin spermatheca49 ± 24 of 4 0.42Down
Mated spermatheca62 ± 54 of 4 0.53Down
Adult carcass157 ± 154 of 4 1.30None
Larval CNS130 ± 214 of 4 1.11None
Larval Salivary gland169 ± 124 of 4 1.45Up
Larval midgut238 ± 84 of 4 2.04Up
Larval tubule136 ± 94 of 4 1.20None
Larval hindgut809 ± 204 of 4 6.90Up
Larval fat body120 ± 114 of 4 1.00None
Larval trachea382 ± 434 of 4 3.27Up
Larval carcass433 ± 184 of 4 3.70Up
S2 cells (growing)52 ± 24 of 4 0.45Down
Whole fly117 ± 64 of 4

Looking for FBgn0085354. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime