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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085357 through 18771 annotations produced 1 hits



(CG34328):

Annotation Number : HDC19553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085357
Gbrowse : chrX:18293653-18294055 (-) // 100.0 //
Probeset : 1640802_at
Accessions : protein= NP_001097019;, nucleotide= NM_001103549;
FlyMine data for FBgn0085357.
VDRC has 1 RNAi stocks for FBgn0085357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 24 of 4 2.10Up
Head3 ± 10 of 4 0.30Down
Eye13 ± 24 of 4 1.08None
Thoracicoabdominal ganglion12 ± 20 of 4 1.00None
Salivary gland8 ± 50 of 4 0.70None
Crop10 ± 20 of 4 0.80None
Midgut13 ± 10 of 4 1.00None
Tubule4 ± 00 of 4 0.40Down
Hindgut16 ± 11 of 4 1.30None
Heart19 ± 24 of 4 1.54None
Fat body19 ± 20 of 4 1.52Up
Ovary3 ± 10 of 4 0.30Down
Testis95 ± 34 of 4 7.60Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.45Down
Mated spermatheca3 ± 10 of 4 0.30Down
Adult carcass15 ± 20 of 4 1.20None
Larval CNS3 ± 20 of 4 0.30Down
Larval Salivary gland8 ± 10 of 4 0.66None
Larval midgut8 ± 20 of 4 0.64None
Larval tubule6 ± 20 of 4 0.50None
Larval hindgut8 ± 10 of 4 0.65Down
Larval fat body82 ± 44 of 4 6.50Up
Larval trachea5 ± 40 of 4 0.44Down
Larval carcass3 ± 10 of 4 0.29Down
S2 cells (growing)14 ± 10 of 4 1.12None
Whole fly12 ± 01 of 4

Looking for FBgn0085357. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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