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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085366 through 18771 annotations produced 1 hits



(CG34337):

Annotation Number : S.CX000804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085366
Gbrowse : chrX:7311304-7311590 (+) // 100.0 //
Probeset : 1635458_at
Accessions : protein= NP_001096901;, nucleotide= NM_001103431;
FlyMine data for FBgn0085366.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.70Down
Head7 ± 11 of 4 1.10None
Eye3 ± 10 of 4 0.54None
Thoracicoabdominal ganglion4 ± 10 of 4 0.60None
Salivary gland11 ± 00 of 4 1.55Up
Crop5 ± 11 of 4 0.80None
Midgut10 ± 13 of 4 1.50None
Tubule5 ± 01 of 4 0.80Down
Hindgut10 ± 13 of 4 1.40None
Heart2 ± 00 of 4 0.31Down
Fat body8 ± 23 of 4 1.13None
Ovary4 ± 03 of 4 0.60Down
Testis6 ± 13 of 4 0.90None
Male accessory glands6 ± 10 of 4 1.00None
Virgin spermatheca7 ± 02 of 4 1.00None
Mated spermatheca7 ± 10 of 4 1.00None
Adult carcass11 ± 10 of 4 1.60None
Larval CNS3 ± 12 of 4 0.49Down
Larval Salivary gland6 ± 21 of 4 0.84None
Larval midgut7 ± 12 of 4 1.02None
Larval tubule6 ± 02 of 4 1.00None
Larval hindgut4 ± 00 of 4 0.67Down
Larval fat body12 ± 33 of 4 1.70None
Larval trachea4 ± 10 of 4 0.69None
Larval carcass7 ± 11 of 4 1.00None
S2 cells (growing)5 ± 01 of 4 0.72None
Whole fly7 ± 03 of 4

Looking for FBgn0085366. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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