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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085367 through 18771 annotations produced 2 hits



(CG34338):

Annotation Number : HDC17874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085367
Gbrowse : chrX:7662318-7664943 (+) // 100.0 //
Probeset : 1632842_at
Accessions : protein= NP_001096903;, nucleotide= NM_001103433;
FlyMine data for FBgn0085367.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 2.30None
Head4 ± 00 of 4 3.30Up
Eye4 ± 10 of 4 2.95None
Thoracicoabdominal ganglion5 ± 10 of 4 3.60None
Salivary gland9 ± 60 of 4 6.39None
Crop1 ± 00 of 4 1.20None
Midgut3 ± 10 of 4 2.30None
Tubule4 ± 10 of 4 2.90Up
Hindgut5 ± 20 of 4 3.70None
Heart1 ± 00 of 4 1.09None
Fat body4 ± 20 of 4 3.14None
Ovary1 ± 00 of 4 1.00None
Testis2 ± 10 of 4 1.90None
Male accessory glands5 ± 10 of 4 4.10None
Virgin spermatheca2 ± 00 of 4 2.07None
Mated spermatheca1 ± 00 of 4 1.09None
Adult carcass7 ± 20 of 4 5.40None
Larval CNS3 ± 20 of 4 2.20None
Larval Salivary gland3 ± 10 of 4 2.41None
Larval midgut3 ± 10 of 4 2.32None
Larval tubule2 ± 00 of 4 1.50None
Larval hindgut4 ± 20 of 4 3.11None
Larval fat body2 ± 00 of 4 1.90None
Larval trachea1 ± 00 of 4 0.91None
Larval carcass2 ± 00 of 4 1.70None
S2 cells (growing)3 ± 00 of 4 2.79Up
Whole fly1 ± 00 of 4



(CG34338):

Annotation Number : S.CX000828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085367
Gbrowse : chrX:7662809-7663142 (+) // 100.0 //
Probeset : 1634907_s_at
Accessions : protein= NP_001096903;, nucleotide= NM_001103433;
FlyMine data for FBgn0085367.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 2.00None
Head2 ± 10 of 4 1.50None
Eye1 ± 00 of 4 0.92None
Thoracicoabdominal ganglion5 ± 20 of 4 3.00None
Salivary gland6 ± 20 of 4 3.85None
Crop4 ± 10 of 4 2.50None
Midgut1 ± 00 of 4 0.70None
Tubule2 ± 00 of 4 1.30None
Hindgut1 ± 00 of 4 0.90None
Heart2 ± 00 of 4 1.32None
Fat body1 ± 00 of 4 0.59Down
Ovary0 ± 00 of 4 0.40Down
Testis1 ± 00 of 4 1.00None
Male accessory glands2 ± 10 of 4 1.40None
Virgin spermatheca1 ± 00 of 4 0.87None
Mated spermatheca2 ± 00 of 4 1.20None
Adult carcass5 ± 20 of 4 3.30None
Larval CNS2 ± 10 of 4 1.59None
Larval Salivary gland3 ± 10 of 4 1.83None
Larval midgut1 ± 00 of 4 0.56Down
Larval tubule2 ± 10 of 4 1.60None
Larval hindgut1 ± 00 of 4 0.92None
Larval fat body5 ± 30 of 4 3.20None
Larval trachea3 ± 20 of 4 2.03None
Larval carcass5 ± 10 of 4 2.93None
S2 cells (growing)1 ± 00 of 4 0.63None
Whole fly1 ± 00 of 4

Looking for FBgn0085367. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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