FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085369 through 18771 annotations produced 2 hits

CG10017 (CG34340):

Annotation Number : HDC00631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085369
Gbrowse : chr2L:3676287-3678889 (+) // 100.0 //
Probeset : 1635929_at
Accessions : protein= NP_001097075;, nucleotide= NM_001103605;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0085369.
VDRC has 3 RNAi stocks for FBgn0085369 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 0	4 of 4	3.80	Up
Head	1 ± 1	0 of 4	0.80	None
Eye	1 ± 0	0 of 4	0.50	None
Thoracicoabdominal ganglion	6 ± 1	3 of 4	3.10	None
Salivary gland	7 ± 2	0 of 4	3.16	None
Crop	2 ± 1	0 of 4	1.00	None
Midgut	3 ± 1	1 of 4	1.60	None
Tubule	1 ± 0	0 of 4	0.60	None
Hindgut	3 ± 0	0 of 4	1.60	None
Heart	0 ± 0	0 of 4	0.36	Down
Fat body	1 ± 1	0 of 4	0.78	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	1 ± 1	0 of 4	0.80	None
Male accessory glands	4 ± 3	0 of 4	2.00	None
Virgin spermatheca	1 ± 0	0 of 4	0.42	None
Mated spermatheca	2 ± 1	0 of 4	1.21	None
Adult carcass	3 ± 2	0 of 4	1.40	None
Larval CNS	3 ± 2	1 of 4	1.68	None
Larval Salivary gland	5 ± 0	1 of 4	2.52	Up
Larval midgut	2 ± 0	0 of 4	1.14	None
Larval tubule	4 ± 0	0 of 4	1.80	Up
Larval hindgut	2 ± 1	0 of 4	1.09	None
Larval fat body	2 ± 0	0 of 4	1.00	None
Larval trachea	1 ± 1	0 of 4	0.73	None
Larval carcass	1 ± 0	0 of 4	0.83	None
S2 cells (growing)	2 ± 1	0 of 4	0.89	None
Whole fly	2 ± 0	0 of 4

CG10017 (CG34340):

Annotation Number : CG10017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085369
Gbrowse : chr2L:3690320-3691478 (+) // 100.0 //
Probeset : 1637070_at
Accessions : protein= NP_001097075;, nucleotide= NM_001103605;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0085369.
VDRC has 3 RNAi stocks for FBgn0085369 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	49 ± 2	4 of 4	6.20	Up
Head	16 ± 2	4 of 4	2.00	Up
Eye	8 ± 2	0 of 4	1.07	None
Thoracicoabdominal ganglion	42 ± 3	4 of 4	5.30	Up
Salivary gland	14 ± 3	1 of 4	1.83	None
Crop	7 ± 1	1 of 4	1.00	None
Midgut	5 ± 1	0 of 4	0.70	None
Tubule	6 ± 1	0 of 4	0.80	None
Hindgut	6 ± 1	1 of 4	0.80	None
Heart	5 ± 1	1 of 4	0.66	None
Fat body	13 ± 4	4 of 4	1.67	None
Ovary	5 ± 1	2 of 4	0.70	None
Testis	4 ± 1	0 of 4	0.60	None
Male accessory glands	12 ± 2	1 of 4	1.50	None
Virgin spermatheca	10 ± 2	4 of 4	1.35	None
Mated spermatheca	11 ± 2	0 of 4	1.39	None
Adult carcass	9 ± 2	1 of 4	1.10	None
Larval CNS	19 ± 2	4 of 4	2.38	Up
Larval Salivary gland	9 ± 2	2 of 4	1.21	None
Larval midgut	9 ± 1	1 of 4	1.21	None
Larval tubule	11 ± 1	2 of 4	1.50	None
Larval hindgut	6 ± 1	3 of 4	0.83	None
Larval fat body	14 ± 1	3 of 4	1.80	Up
Larval trachea	7 ± 1	0 of 4	0.88	None
Larval carcass	7 ± 0	0 of 4	0.97	None
S2 cells (growing)	5 ± 0	1 of 4	0.74	None
Whole fly	8 ± 1	4 of 4

Looking for FBgn0085369. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720