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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085369 through 18771 annotations produced 2 hits



CG10017 (CG34340):

Annotation Number : HDC00631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085369
Gbrowse : chr2L:3676287-3678889 (+) // 100.0 //
Probeset : 1635929_at
Accessions : protein= NP_001097075;, nucleotide= NM_001103605;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0085369.
VDRC has 3 RNAi stocks for FBgn0085369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 04 of 4 3.80Up
Head1 10 of 4 0.80None
Eye1 00 of 4 0.50None
Thoracicoabdominal ganglion6 13 of 4 3.10None
Salivary gland7 20 of 4 3.16None
Crop2 10 of 4 1.00None
Midgut3 11 of 4 1.60None
Tubule1 00 of 4 0.60None
Hindgut3 00 of 4 1.60None
Heart0 00 of 4 0.36Down
Fat body1 10 of 4 0.78None
Ovary0 00 of 4 0.40None
Testis1 10 of 4 0.80None
Male accessory glands4 30 of 4 2.00None
Virgin spermatheca1 00 of 4 0.42None
Mated spermatheca2 10 of 4 1.21None
Adult carcass3 20 of 4 1.40None
Larval CNS3 21 of 4 1.68None
Larval Salivary gland5 01 of 4 2.52Up
Larval midgut2 00 of 4 1.14None
Larval tubule4 00 of 4 1.80Up
Larval hindgut2 10 of 4 1.09None
Larval fat body2 00 of 4 1.00None
Larval trachea1 10 of 4 0.73None
Larval carcass1 00 of 4 0.83None
S2 cells (growing)2 10 of 4 0.89None
Whole fly2 00 of 4



CG10017 (CG34340):

Annotation Number : CG10017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085369
Gbrowse : chr2L:3690320-3691478 (+) // 100.0 //
Probeset : 1637070_at
Accessions : protein= NP_001097075;, nucleotide= NM_001103605;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0085369.
VDRC has 3 RNAi stocks for FBgn0085369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 24 of 4 6.20Up
Head16 24 of 4 2.00Up
Eye8 20 of 4 1.07None
Thoracicoabdominal ganglion42 34 of 4 5.30Up
Salivary gland14 31 of 4 1.83None
Crop7 11 of 4 1.00None
Midgut5 10 of 4 0.70None
Tubule6 10 of 4 0.80None
Hindgut6 11 of 4 0.80None
Heart5 11 of 4 0.66None
Fat body13 44 of 4 1.67None
Ovary5 12 of 4 0.70None
Testis4 10 of 4 0.60None
Male accessory glands12 21 of 4 1.50None
Virgin spermatheca10 24 of 4 1.35None
Mated spermatheca11 20 of 4 1.39None
Adult carcass9 21 of 4 1.10None
Larval CNS19 24 of 4 2.38Up
Larval Salivary gland9 22 of 4 1.21None
Larval midgut9 11 of 4 1.21None
Larval tubule11 12 of 4 1.50None
Larval hindgut6 13 of 4 0.83None
Larval fat body14 13 of 4 1.80Up
Larval trachea7 10 of 4 0.88None
Larval carcass7 00 of 4 0.97None
S2 cells (growing)5 01 of 4 0.74None
Whole fly8 14 of 4

Looking for FBgn0085369. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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