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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085371 through 18771 annotations produced 2 hits



CG10629 (CG34342):

Annotation Number : CG10629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085371
Gbrowse : chr3L:5500295-5503920 (-) // 100.0 //
Probeset : 1638214_at
Accessions : protein= NP_001097509; /// NP_001163351;, nucleotide= NM_001104039; /// NM_001169880;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0085371.
VDRC has 3 RNAi stocks for FBgn0085371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.40Down
Head15 11 of 4 1.70Up
Eye7 20 of 4 0.79None
Thoracicoabdominal ganglion6 20 of 4 0.70None
Salivary gland16 40 of 4 1.78None
Crop8 20 of 4 0.90None
Midgut11 00 of 4 1.30None
Tubule11 10 of 4 1.30None
Hindgut9 11 of 4 1.10None
Heart3 00 of 4 0.33Down
Fat body14 60 of 4 1.56None
Ovary2 00 of 4 0.20Down
Testis4 10 of 4 0.50None
Male accessory glands15 30 of 4 1.70None
Virgin spermatheca8 00 of 4 0.91None
Mated spermatheca6 10 of 4 0.72None
Adult carcass9 20 of 4 1.10None
Larval CNS3 20 of 4 0.34Down
Larval Salivary gland11 10 of 4 1.27None
Larval midgut10 20 of 4 1.15None
Larval tubule15 11 of 4 1.70Up
Larval hindgut7 10 of 4 0.81None
Larval fat body12 21 of 4 1.40None
Larval trachea9 01 of 4 0.98None
Larval carcass10 00 of 4 1.14None
S2 cells (growing)10 00 of 4 1.14None
Whole fly9 10 of 4



CG10629 (CG34342):

Annotation Number : S.C3L000689
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085371
Gbrowse : chr3L:5496947-5498800 (-) // 100.0 //
Probeset : 1625157_at
Accessions : protein= NP_001097509; /// NP_001163351;, nucleotide= NM_001104039; /// NM_001169880;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0085371.
VDRC has 3 RNAi stocks for FBgn0085371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.30None
Head35 34 of 419.80Up
Eye3 00 of 4 2.18None
Thoracicoabdominal ganglion3 00 of 4 1.90None
Salivary gland3 00 of 4 1.68None
Crop3 11 of 4 2.10None
Midgut1 00 of 4 0.90None
Tubule4 00 of 4 2.60Up
Hindgut2 10 of 4 1.60None
Heart1 00 of 4 0.88None
Fat body3 20 of 4 1.85None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 0.30None
Male accessory glands7 10 of 4 4.10Up
Virgin spermatheca0 00 of 4 0.49None
Mated spermatheca5 20 of 4 2.86None
Adult carcass1 00 of 4 0.90None
Larval CNS1 00 of 4 0.78None
Larval Salivary gland2 00 of 4 1.21None
Larval midgut1 00 of 4 0.74None
Larval tubule0 00 of 4 0.40None
Larval hindgut2 00 of 4 1.26None
Larval fat body2 00 of 4 1.20None
Larval trachea3 20 of 4 1.96None
Larval carcass0 00 of 4 0.47None
S2 cells (growing)1 00 of 4 0.76None
Whole fly1 00 of 4

Looking for FBgn0085371. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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