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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085374 through 18771 annotations produced 2 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:6623891-6625001 (+) // 100.0 //):

Annotation Number : CG11053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1630646_at
Accessions : protein= EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30Down
Head4 20 of 4 1.10None
Eye0 00 of 4 0.24Down
Thoracicoabdominal ganglion3 10 of 4 0.80None
Salivary gland7 30 of 4 1.79None
Crop6 30 of 4 1.70None
Midgut3 10 of 4 0.80None
Tubule2 00 of 4 0.60Down
Hindgut2 20 of 4 0.70None
Heart0 00 of 4 0.20Down
Fat body1 00 of 4 0.27Down
Ovary1 00 of 4 0.40Down
Testis3 00 of 4 0.90None
Male accessory glands330 114 of 483.60Up
Virgin spermatheca1 00 of 4 0.35Down
Mated spermatheca0 00 of 4 0.23Down
Adult carcass1 00 of 4 0.50Down
Larval CNS0 00 of 4 0.19Down
Larval Salivary gland1 00 of 4 0.39Down
Larval midgut2 00 of 4 0.65None
Larval tubule1 00 of 4 0.40Down
Larval hindgut1 00 of 4 0.34Down
Larval fat body1 00 of 4 0.30Down
Larval trachea1 10 of 4 0.41None
Larval carcass1 00 of 4 0.41Down
S2 cells (growing)2 00 of 4 0.56Down
Whole fly4 00 of 4



CG11053 (CG34345):

Annotation Number : Stencil:2L:6611362:6616047:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085374
Gbrowse : chr2L:6619146-6623831 (+) // 100.0 //
Probeset : 1622964_at
Accessions : protein= NP_001097101;, nucleotide= NM_001103631;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from sequence or structural similarity /// 0004656 //
FlyMine data for FBgn0085374.
TRiP has 1 RNAi stocks for FBgn0085374 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085374 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head3 10 of 4 0.80None
Eye1 10 of 4 0.39None
Thoracicoabdominal ganglion2 10 of 4 0.50None
Salivary gland1 00 of 4 0.24None
Crop2 10 of 4 0.50None
Midgut1 00 of 4 0.20None
Tubule4 10 of 4 0.80None
Hindgut6 10 of 4 1.40None
Heart3 00 of 4 0.69None
Fat body11 34 of 4 2.34Up
Ovary2 00 of 4 0.50None
Testis2 00 of 4 0.60None
Male accessory glands224 124 of 446.90Up
Virgin spermatheca8 10 of 4 1.73None
Mated spermatheca5 00 of 4 1.14None
Adult carcass5 10 of 4 1.10None
Larval CNS1 10 of 4 0.36None
Larval Salivary gland3 10 of 4 0.75None
Larval midgut1 00 of 4 0.25None
Larval tubule5 20 of 4 1.20None
Larval hindgut1 00 of 4 0.40None
Larval fat body2 10 of 4 0.60None
Larval trachea3 21 of 4 0.75None
Larval carcass3 00 of 4 0.80None
S2 cells (growing)0 00 of 4 0.17None
Whole fly4 10 of 4

Looking for FBgn0085374. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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