FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085376 through 18771 annotations produced 5 hits

CG11339 (CG34347):

Annotation Number : S.C3R003641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085376
Gbrowse : chr3R:27166219-27172385 (+) // 100.0 //
Probeset : 1632588_at
Accessions : protein= NP_001097989; /// NP_001138132;, nucleotide= NM_001104519; /// NM_001144660;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0085376.
VDRC has 6 RNAi stocks for FBgn0085376 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	3 of 4	1.40	None
Head	6 ± 1	0 of 4	0.90	None
Eye	7 ± 0	2 of 4	1.09	None
Thoracicoabdominal ganglion	8 ± 0	0 of 4	1.20	None
Salivary gland	20 ± 2	1 of 4	2.82	Up
Crop	10 ± 1	0 of 4	1.40	None
Midgut	3 ± 1	0 of 4	0.50	None
Tubule	5 ± 1	0 of 4	0.70	None
Hindgut	6 ± 1	0 of 4	0.90	None
Heart	8 ± 0	1 of 4	1.18	None
Fat body	10 ± 4	0 of 4	1.46	None
Ovary	4 ± 0	1 of 4	0.70	None
Testis	15 ± 0	3 of 4	2.20	Up
Male accessory glands	11 ± 2	0 of 4	1.60	None
Virgin spermatheca	12 ± 0	1 of 4	1.78	Up
Mated spermatheca	13 ± 2	2 of 4	1.85	None
Adult carcass	9 ± 6	1 of 4	1.30	None
Larval CNS	7 ± 1	3 of 4	1.12	None
Larval Salivary gland	8 ± 1	0 of 4	1.14	None
Larval midgut	6 ± 2	1 of 4	0.94	None
Larval tubule	8 ± 0	2 of 4	1.20	None
Larval hindgut	7 ± 0	0 of 4	1.01	None
Larval fat body	8 ± 2	0 of 4	1.20	None
Larval trachea	9 ± 2	2 of 4	1.39	None
Larval carcass	10 ± 0	0 of 4	1.45	None
S2 cells (growing)	5 ± 2	0 of 4	0.73	None
Whole fly	7 ± 1	0 of 4

CG11339 (CG34347):

Annotation Number : CT35683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085376
Gbrowse : chr3R:27195944-27196221 (+) // 100.0 //
Probeset : 1624449_at
Accessions : protein= NP_001097989; /// NP_001138132;, nucleotide= NM_001104519; /// NM_001144660;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0085376.
VDRC has 6 RNAi stocks for FBgn0085376 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 2	1 of 4	2.80	None
Head	6 ± 2	1 of 4	2.30	None
Eye	1 ± 0	0 of 4	0.43	None
Thoracicoabdominal ganglion	7 ± 1	1 of 4	2.60	None
Salivary gland	7 ± 2	0 of 4	2.55	None
Crop	4 ± 1	0 of 4	1.40	None
Midgut	5 ± 1	0 of 4	2.00	None
Tubule	5 ± 1	0 of 4	1.70	Up
Hindgut	4 ± 1	1 of 4	1.60	None
Heart	1 ± 0	0 of 4	0.53	None
Fat body	6 ± 4	0 of 4	2.15	None
Ovary	3 ± 1	0 of 4	1.30	None
Testis	1 ± 0	0 of 4	0.60	None
Male accessory glands	7 ± 3	0 of 4	2.50	None
Virgin spermatheca	3 ± 1	0 of 4	1.03	None
Mated spermatheca	5 ± 1	0 of 4	1.75	None
Adult carcass	8 ± 0	0 of 4	2.90	Up
Larval CNS	8 ± 1	3 of 4	2.91	Up
Larval Salivary gland	6 ± 2	0 of 4	2.05	None
Larval midgut	8 ± 2	1 of 4	3.01	None
Larval tubule	11 ± 1	1 of 4	3.80	Up
Larval hindgut	6 ± 1	1 of 4	2.24	None
Larval fat body	10 ± 1	2 of 4	3.60	Up
Larval trachea	5 ± 4	0 of 4	2.00	None
Larval carcass	6 ± 1	0 of 4	2.20	None
S2 cells (growing)	5 ± 1	0 of 4	1.80	None
Whole fly	2 ± 1	0 of 4

CG11339 (CG34347):

Annotation Number : HDC16555
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085376
Gbrowse : chr3R:27136715-27137094 (+) // 100.0 //
Probeset : 1637296_at
Accessions : protein= NP_001097989; /// NP_001138132;, nucleotide= NM_001104519; /// NM_001144660;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0085376.
VDRC has 6 RNAi stocks for FBgn0085376 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	3.30	None
Head	1 ± 0	0 of 4	1.00	None
Eye	1 ± 0	0 of 4	0.97	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.50	None
Salivary gland	19 ± 6	2 of 4	10.41	None
Crop	3 ± 2	0 of 4	2.10	None
Midgut	2 ± 0	0 of 4	1.20	None
Tubule	4 ± 0	0 of 4	2.40	Up
Hindgut	5 ± 1	0 of 4	2.80	None
Heart	1 ± 0	0 of 4	0.91	None
Fat body	1 ± 0	0 of 4	0.92	None
Ovary	1 ± 0	0 of 4	0.60	None
Testis	2 ± 0	0 of 4	1.30	None
Male accessory glands	5 ± 2	0 of 4	3.10	None
Virgin spermatheca	3 ± 1	0 of 4	1.60	None
Mated spermatheca	2 ± 1	0 of 4	1.41	None
Adult carcass	5 ± 2	0 of 4	2.70	None
Larval CNS	1 ± 0	0 of 4	0.81	None
Larval Salivary gland	2 ± 0	0 of 4	1.31	None
Larval midgut	2 ± 0	0 of 4	1.17	None
Larval tubule	5 ± 1	0 of 4	2.80	None
Larval hindgut	3 ± 1	0 of 4	1.61	None
Larval fat body	2 ± 0	0 of 4	1.20	None
Larval trachea	2 ± 2	0 of 4	1.56	None
Larval carcass	1 ± 0	0 of 4	1.05	None
S2 cells (growing)	2 ± 0	0 of 4	1.27	None
Whole fly	1 ± 0	0 of 4

CG11339 (CG34347):

Annotation Number : CG15566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085376
Gbrowse : chr3R:27192603-27193248 (+) // 100.0 //
Probeset : 1639623_at
Accessions : protein= NP_001097989; /// NP_001138132;, nucleotide= NM_001104519; /// NM_001144660;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0085376.
VDRC has 6 RNAi stocks for FBgn0085376 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	4 of 4	3.00	Up
Head	4 ± 0	0 of 4	0.90	None
Eye	1 ± 0	0 of 4	0.39	None
Thoracicoabdominal ganglion	12 ± 2	3 of 4	3.00	Up
Salivary gland	10 ± 3	0 of 4	2.38	None
Crop	4 ± 1	0 of 4	1.10	None
Midgut	0 ± 0	0 of 4	0.20	None
Tubule	2 ± 0	0 of 4	0.70	Down
Hindgut	5 ± 1	1 of 4	1.20	None
Heart	2 ± 0	0 of 4	0.52	None
Fat body	6 ± 2	0 of 4	1.61	None
Ovary	4 ± 0	0 of 4	1.00	None
Testis	2 ± 0	1 of 4	0.60	None
Male accessory glands	4 ± 1	0 of 4	1.00	None
Virgin spermatheca	1 ± 1	0 of 4	0.44	None
Mated spermatheca	2 ± 1	0 of 4	0.69	None
Adult carcass	6 ± 2	0 of 4	1.50	None
Larval CNS	13 ± 1	4 of 4	3.20	Up
Larval Salivary gland	5 ± 1	0 of 4	1.24	None
Larval midgut	6 ± 1	0 of 4	1.59	None
Larval tubule	4 ± 1	0 of 4	1.20	None
Larval hindgut	3 ± 1	0 of 4	0.86	None
Larval fat body	5 ± 2	0 of 4	1.40	None
Larval trachea	4 ± 2	0 of 4	0.97	None
Larval carcass	4 ± 1	0 of 4	1.07	None
S2 cells (growing)	4 ± 0	0 of 4	0.99	None
Whole fly	4 ± 1	0 of 4

CG11339 (CG34347):

Annotation Number : CG11339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085376
Gbrowse : chr3R:27176792-27188119 (+) // 100.0 //
Probeset : 1630193_at
Accessions : protein= NP_001097989; /// NP_001138132;, nucleotide= NM_001104519; /// NM_001144660;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0085376.
Homophila reports that CG11339 is a close match (8e-15) to human gene NF2 (NP_861969), a gene associated with Meningioma, NF2-related, somatic, 607174 (3);Neurofibromatosis, type 2, 101000 (3);Schwannomatosis, 162091 (3).
VDRC has 6 RNAi stocks for FBgn0085376 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	3 of 4	4.50	Up
Head	4 ± 1	0 of 4	1.80	None
Eye	3 ± 0	0 of 4	1.42	None
Thoracicoabdominal ganglion	8 ± 0	2 of 4	3.70	Up
Salivary gland	11 ± 2	0 of 4	5.09	Up
Crop	2 ± 0	0 of 4	1.00	None
Midgut	6 ± 0	0 of 4	3.00	Up
Tubule	5 ± 0	0 of 4	2.20	Up
Hindgut	5 ± 1	0 of 4	2.50	None
Heart	2 ± 0	0 of 4	1.23	None
Fat body	4 ± 0	0 of 4	2.14	Up
Ovary	3 ± 0	0 of 4	1.30	None
Testis	2 ± 1	0 of 4	1.00	None
Male accessory glands	10 ± 1	2 of 4	4.60	Up
Virgin spermatheca	2 ± 0	0 of 4	1.04	None
Mated spermatheca	2 ± 0	0 of 4	0.96	None
Adult carcass	10 ± 5	0 of 4	4.60	None
Larval CNS	6 ± 3	2 of 4	2.93	None
Larval Salivary gland	6 ± 0	0 of 4	3.00	Up
Larval midgut	3 ± 1	0 of 4	1.60	None
Larval tubule	10 ± 1	1 of 4	4.70	Up
Larval hindgut	4 ± 1	0 of 4	2.10	None
Larval fat body	4 ± 1	0 of 4	2.10	None
Larval trachea	5 ± 2	1 of 4	2.35	None
Larval carcass	11 ± 1	0 of 4	4.78	Up
S2 cells (growing)	2 ± 1	0 of 4	1.17	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0085376. 5 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720