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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085377 through 18771 annotations produced 2 hits



CG11757 (CG34348):

Annotation Number : CT35121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085377
Gbrowse : chrX:11234484-11234782 (+) // 100.0 //
Probeset : 1626123_at
Accessions : protein= NP_001096954;, nucleotide= NM_001103484;
Interpro : 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferr
FlyMine data for FBgn0085377.
VDRC has 2 RNAi stocks for FBgn0085377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 04 of 4 0.60Down
Head18 21 of 4 0.40Down
Eye13 03 of 4 0.32Down
Thoracicoabdominal ganglion25 34 of 4 0.60Down
Salivary gland22 03 of 4 0.52Down
Crop106 64 of 4 2.50Up
Midgut45 10 of 4 1.10None
Tubule12 10 of 4 0.30Down
Hindgut79 34 of 4 1.90Up
Heart23 14 of 4 0.56Down
Fat body32 104 of 4 0.76None
Ovary95 54 of 4 2.20Up
Testis5 00 of 4 0.10Down
Male accessory glands16 03 of 4 0.40Down
Virgin spermatheca13 21 of 4 0.33Down
Mated spermatheca17 21 of 4 0.41Down
Adult carcass55 64 of 4 1.30None
Larval CNS23 44 of 4 0.56Down
Larval Salivary gland17 14 of 4 0.41Down
Larval midgut43 32 of 4 1.02None
Larval tubule59 84 of 4 1.40None
Larval hindgut49 14 of 4 1.17None
Larval fat body25 34 of 4 0.60Down
Larval trachea12 54 of 4 0.30Down
Larval carcass19 33 of 4 0.47Down
S2 cells (growing)160 74 of 4 3.78Up
Whole fly42 54 of 4



CG11757 (CG34348):

Annotation Number : CG11757
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085377
Gbrowse : chrX:11237288-11238128 (+) // 100.0 //
Probeset : 1626316_at
Accessions : protein= NP_001096954;, nucleotide= NM_001103484;
Interpro : 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferr
FlyMine data for FBgn0085377.
VDRC has 2 RNAi stocks for FBgn0085377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.70None
Head20 33 of 4 0.50None
Eye30 34 of 4 0.72None
Thoracicoabdominal ganglion28 54 of 4 0.70None
Salivary gland24 33 of 4 0.58None
Crop93 54 of 4 2.20Up
Midgut36 04 of 4 0.90None
Tubule14 02 of 4 0.40Down
Hindgut67 44 of 4 1.60Up
Heart34 14 of 4 0.82None
Fat body33 84 of 4 0.79None
Ovary90 44 of 4 2.20Up
Testis6 23 of 4 0.20Down
Male accessory glands19 44 of 4 0.50None
Virgin spermatheca14 14 of 4 0.36Down
Mated spermatheca14 14 of 4 0.34Down
Adult carcass48 64 of 4 1.20None
Larval CNS23 34 of 4 0.56None
Larval Salivary gland24 24 of 4 0.57None
Larval midgut44 24 of 4 1.05None
Larval tubule44 34 of 4 1.10None
Larval hindgut53 14 of 4 1.27None
Larval fat body21 14 of 4 0.50None
Larval trachea32 24 of 4 0.77None
Larval carcass20 34 of 4 0.49None
S2 cells (growing)94 34 of 4 2.25Up
Whole fly41 84 of 4

Looking for FBgn0085377. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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