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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085382 through 18771 annotations produced 3 hits



CG12274 (CG34353):

Annotation Number : CG12427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085382
Gbrowse : chr3R:23595711-23596968 (-) // 100.0 //
Probeset : 1626062_at
Accessions : protein= NP_001097949;, nucleotide= NM_001104479;
FlyMine data for FBgn0085382.
VDRC has 12 RNAi stocks for FBgn0085382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 10 of 4 3.40Up
Head8 ± 20 of 4 1.50None
Eye3 ± 00 of 4 0.58None
Thoracicoabdominal ganglion22 ± 30 of 4 4.30Up
Salivary gland22 ± 40 of 4 4.18Up
Crop5 ± 10 of 4 1.00None
Midgut4 ± 10 of 4 0.80None
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.70None
Heart1 ± 00 of 4 0.30None
Fat body9 ± 00 of 4 1.67None
Ovary1 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.30None
Male accessory glands4 ± 20 of 4 0.90None
Virgin spermatheca4 ± 00 of 4 0.85None
Mated spermatheca3 ± 20 of 4 0.62None
Adult carcass5 ± 10 of 4 1.00None
Larval CNS6 ± 10 of 4 1.17None
Larval Salivary gland1 ± 00 of 4 0.33None
Larval midgut2 ± 10 of 4 0.49None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut3 ± 10 of 4 0.71None
Larval fat body7 ± 40 of 4 1.40None
Larval trachea2 ± 10 of 4 0.40None
Larval carcass2 ± 00 of 4 0.43None
S2 cells (growing)1 ± 00 of 4 0.25None
Whole fly5 ± 10 of 4



CG12274 (CG34353):

Annotation Number : CG12274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085382
Gbrowse : chr3R:23607117-23607351 (-) // 100.0 //
Probeset : 1625508_at
Accessions : protein= NP_001097949;, nucleotide= NM_001104479;
FlyMine data for FBgn0085382.
VDRC has 12 RNAi stocks for FBgn0085382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 04 of 4 7.40Up
Head11 ± 30 of 4 2.80None
Eye1 ± 00 of 4 0.25Down
Thoracicoabdominal ganglion18 ± 21 of 4 4.50Up
Salivary gland2 ± 00 of 4 0.60None
Crop4 ± 10 of 4 1.00None
Midgut5 ± 30 of 4 1.40None
Tubule2 ± 00 of 4 0.70None
Hindgut6 ± 20 of 4 1.50None
Heart3 ± 10 of 4 0.81None
Fat body5 ± 30 of 4 1.39None
Ovary2 ± 00 of 4 0.70None
Testis3 ± 10 of 4 0.80None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.43None
Mated spermatheca3 ± 10 of 4 0.78None
Adult carcass5 ± 10 of 4 1.30None
Larval CNS9 ± 00 of 4 2.17Up
Larval Salivary gland3 ± 00 of 4 0.72None
Larval midgut6 ± 20 of 4 1.66None
Larval tubule4 ± 20 of 4 1.10None
Larval hindgut2 ± 00 of 4 0.69None
Larval fat body5 ± 10 of 4 1.30None
Larval trachea4 ± 20 of 4 0.98None
Larval carcass6 ± 30 of 4 1.63None
S2 cells (growing)2 ± 10 of 4 0.51None
Whole fly4 ± 10 of 4



CG12274 (CG34353):

Annotation Number : CG5572
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085382
Gbrowse : chr3R:23623097-23623686 (-) // 100.0 //
Probeset : 1639382_at
Accessions : protein= NP_001097949;, nucleotide= NM_001104479;
FlyMine data for FBgn0085382.
VDRC has 12 RNAi stocks for FBgn0085382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 8.00None
Head2 ± 00 of 4 3.20None
Eye4 ± 00 of 4 4.86Up
Thoracicoabdominal ganglion3 ± 10 of 4 3.80None
Salivary gland4 ± 00 of 4 5.28Up
Crop1 ± 00 of 4 1.20None
Midgut1 ± 00 of 4 1.70None
Tubule1 ± 00 of 4 1.20Up
Hindgut0 ± 00 of 4 0.70None
Heart2 ± 10 of 4 2.33None
Fat body2 ± 10 of 4 2.33None
Ovary0 ± 00 of 4 0.70None
Testis0 ± 00 of 4 0.70None
Male accessory glands1 ± 00 of 4 1.50None
Virgin spermatheca1 ± 00 of 4 1.22None
Mated spermatheca1 ± 00 of 4 1.69Up
Adult carcass1 ± 00 of 4 1.40None
Larval CNS0 ± 00 of 4 1.06None
Larval Salivary gland1 ± 00 of 4 1.69Up
Larval midgut1 ± 00 of 4 1.81Up
Larval tubule1 ± 00 of 4 1.50None
Larval hindgut0 ± 00 of 4 0.58None
Larval fat body1 ± 00 of 4 2.00None
Larval trachea4 ± 20 of 4 4.81Up
Larval carcass1 ± 00 of 4 1.14None
S2 cells (growing)1 ± 00 of 4 1.22None
Whole fly0 ± 00 of 4

Looking for FBgn0085382. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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