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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085385 through 18771 annotations produced 2 hits



CG12524 (CG34356):

Annotation Number : CG14163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085385
Gbrowse : chr3L:9937493-9942826 (+) // 100.0 //
Probeset : 1623618_at
Accessions : protein= NP_001097570;, nucleotide= NM_001104100;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from el
FlyMine data for FBgn0085385.
VDRC has 5 RNAi stocks for FBgn0085385 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 6.70Up
Head3 ± 10 of 4 1.00None
Eye1 ± 00 of 4 0.50None
Thoracicoabdominal ganglion10 ± 21 of 4 3.10None
Salivary gland3 ± 10 of 4 0.96None
Crop3 ± 10 of 4 0.90None
Midgut4 ± 10 of 4 1.40None
Tubule2 ± 00 of 4 0.70None
Hindgut2 ± 10 of 4 0.80None
Heart0 ± 00 of 4 0.14None
Fat body1 ± 00 of 4 0.33None
Ovary1 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.30None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca0 ± 00 of 4 0.23None
Mated spermatheca0 ± 00 of 4 0.21None
Adult carcass3 ± 20 of 4 1.00None
Larval CNS5 ± 21 of 4 1.68None
Larval Salivary gland1 ± 00 of 4 0.34None
Larval midgut3 ± 10 of 4 0.88None
Larval tubule2 ± 10 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.22None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea0 ± 00 of 4 0.16None
Larval carcass0 ± 00 of 4 0.27None
S2 cells (growing)1 ± 00 of 4 0.39None
Whole fly3 ± 10 of 4



CG12524 (CG34356):

Annotation Number : CG12524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085385
Gbrowse : chr3L:9945257-9948912 (+) // 100.0 //
Probeset : 1638202_at
Accessions : protein= NP_001097570;, nucleotide= NM_001104100;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from el
FlyMine data for FBgn0085385.
VDRC has 5 RNAi stocks for FBgn0085385 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 24 of 438.10Up
Head14 ± 23 of 4 7.70Up
Eye3 ± 10 of 4 2.01None
Thoracicoabdominal ganglion33 ± 34 of 417.80Up
Salivary gland14 ± 52 of 4 7.93None
Crop4 ± 10 of 4 2.50None
Midgut2 ± 00 of 4 1.20None
Tubule5 ± 10 of 4 2.80Up
Hindgut1 ± 00 of 4 0.90None
Heart1 ± 00 of 4 0.96None
Fat body3 ± 10 of 4 1.93None
Ovary1 ± 00 of 4 0.70None
Testis1 ± 00 of 4 0.80None
Male accessory glands6 ± 20 of 4 3.60None
Virgin spermatheca1 ± 00 of 4 0.91None
Mated spermatheca2 ± 00 of 4 1.16None
Adult carcass10 ± 30 of 4 5.50None
Larval CNS27 ± 24 of 414.59Up
Larval Salivary gland5 ± 10 of 4 2.67None
Larval midgut3 ± 10 of 4 1.87None
Larval tubule4 ± 10 of 4 2.20None
Larval hindgut3 ± 10 of 4 1.71None
Larval fat body10 ± 10 of 4 5.80Up
Larval trachea3 ± 30 of 4 1.89None
Larval carcass5 ± 10 of 4 2.87None
S2 cells (growing)2 ± 00 of 4 1.08None
Whole fly1 ± 00 of 4

Looking for FBgn0085385. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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