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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085391 through 18771 annotations produced 2 hits



CG12870 (CG34362):

Annotation Number : CG12872
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085391
Gbrowse : chr3R:23856409-23857284 (+) // 100.0 //
Probeset : 1630576_at
Accessions : protein= NP_001097951; /// NP_001163754; /// NP_651609;, nucleotide= NM_001104481; /// NM_001170283; /// NM_143352;
Pathway : via spliceosome // inferred from mutant phenotype"
FlyMine data for FBgn0085391.
VDRC has 3 RNAi stocks for FBgn0085391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 22 of 4 4.50Up
Head2 ± 00 of 4 0.50None
Eye2 ± 10 of 4 0.69None
Thoracicoabdominal ganglion17 ± 42 of 4 4.40None
Salivary gland6 ± 20 of 4 1.69None
Crop3 ± 10 of 4 0.80None
Midgut10 ± 00 of 4 2.70Up
Tubule3 ± 00 of 4 0.70Down
Hindgut2 ± 10 of 4 0.70None
Heart4 ± 01 of 4 1.21None
Fat body3 ± 20 of 4 0.74None
Ovary2 ± 10 of 4 0.70None
Testis2 ± 00 of 4 0.60None
Male accessory glands7 ± 40 of 4 1.80None
Virgin spermatheca2 ± 00 of 4 0.69None
Mated spermatheca3 ± 10 of 4 0.88None
Adult carcass11 ± 10 of 4 2.90Up
Larval CNS10 ± 23 of 4 2.53Up
Larval Salivary gland11 ± 11 of 4 2.75Up
Larval midgut9 ± 20 of 4 2.40None
Larval tubule6 ± 00 of 4 1.50Up
Larval hindgut2 ± 10 of 4 0.64None
Larval fat body4 ± 21 of 4 1.20None
Larval trachea3 ± 00 of 4 0.92None
Larval carcass4 ± 10 of 4 1.05None
S2 cells (growing)4 ± 00 of 4 1.12None
Whole fly4 ± 00 of 4



CG12870 (CG34362):

Annotation Number : CG12870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085391
Gbrowse : chr3R:23873295-23911484 (+) // 99.44 //
Probeset : 1638820_at
Accessions : protein= NP_001097951; /// NP_001163754; /// NP_651609;, nucleotide= NM_001104481; /// NM_001170283; /// NM_143352;
Pathway : via spliceosome // inferred from mutant phenotype"
FlyMine data for FBgn0085391.
BioGrid reports that CG12870 interacts with CG4491 .
VDRC has 3 RNAi stocks for FBgn0085391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain482 ± 204 of 432.50Up
Head71 ± 44 of 4 4.80Up
Eye14 ± 21 of 4 0.98None
Thoracicoabdominal ganglion560 ± 154 of 437.80Up
Salivary gland4 ± 00 of 4 0.29Down
Crop5 ± 20 of 4 0.40Down
Midgut5 ± 10 of 4 0.40Down
Tubule6 ± 00 of 4 0.40Down
Hindgut5 ± 10 of 4 0.40Down
Heart7 ± 30 of 4 0.48None
Fat body9 ± 70 of 4 0.64None
Ovary0 ± 00 of 4 0.10Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands10 ± 10 of 4 0.70Down
Virgin spermatheca8 ± 00 of 4 0.57Down
Mated spermatheca11 ± 40 of 4 0.75None
Adult carcass13 ± 10 of 4 0.90None
Larval CNS308 ± 204 of 420.79Up
Larval Salivary gland5 ± 00 of 4 0.39Down
Larval midgut5 ± 10 of 4 0.37Down
Larval tubule4 ± 00 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.29Down
Larval fat body6 ± 20 of 4 0.40Down
Larval trachea5 ± 20 of 4 0.37Down
Larval carcass13 ± 40 of 4 0.92None
S2 cells (growing)3 ± 00 of 4 0.21Down
Whole fly14 ± 13 of 4

Looking for FBgn0085391. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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