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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085395 through 18771 annotations produced 2 hits



CG13111 (Shawl):

Annotation Number : CG13111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085395
Gbrowse : chr2L:9373024-9373591 (-) // 100.0 //
Probeset : 1636687_at
Accessions : protein= NP_001097131;, nucleotide= NM_001103661;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0085395.
TRiP has 1 RNAi stocks for FBgn0085395 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 01 of 4 3.60Up
Head3 10 of 4 0.80None
Eye1 00 of 4 0.35None
Thoracicoabdominal ganglion7 10 of 4 1.90None
Salivary gland3 10 of 4 0.95None
Crop1 00 of 4 0.50None
Midgut5 20 of 4 1.50None
Tubule4 00 of 4 1.10None
Hindgut1 00 of 4 0.50None
Heart2 00 of 4 0.58None
Fat body2 00 of 4 0.64None
Ovary1 00 of 4 0.40None
Testis2 10 of 4 0.60None
Male accessory glands2 00 of 4 0.70None
Virgin spermatheca1 00 of 4 0.51None
Mated spermatheca1 00 of 4 0.42None
Adult carcass3 10 of 4 0.80None
Larval CNS1 00 of 4 0.51None
Larval Salivary gland3 10 of 4 0.92None
Larval midgut2 00 of 4 0.66None
Larval tubule4 20 of 4 1.20None
Larval hindgut1 00 of 4 0.29Down
Larval fat body2 00 of 4 0.60None
Larval trachea1 10 of 4 0.51None
Larval carcass2 00 of 4 0.56None
S2 cells (growing)2 00 of 4 0.62None
Whole fly3 00 of 4



CG13111 (Shawl):

Annotation Number : CG4450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085395
Gbrowse : chr2L:9377468-9385084 (-) // 100.0 //
Probeset : 1638914_at
Accessions : protein= NP_001097131;, nucleotide= NM_001103661;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0085395.
Homophila reports that CG4450 is a close match (3e-12) to human gene BFNC2;EBN2;KCNQ3 (NP_004510), a gene associated with Epilepsy, benign neonatal, type 2, 121201 (3).
TRiP has 1 RNAi stocks for FBgn0085395 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 3.00None
Head1 00 of 4 1.70None
Eye0 00 of 4 1.35None
Thoracicoabdominal ganglion4 30 of 4 6.60None
Salivary gland1 00 of 4 2.31None
Crop0 00 of 4 1.10None
Midgut1 00 of 4 2.00Up
Tubule0 00 of 4 1.40Up
Hindgut1 00 of 4 1.50None
Heart0 00 of 4 0.65Down
Fat body1 00 of 4 2.00None
Ovary0 00 of 4 0.80None
Testis2 00 of 4 3.30Up
Male accessory glands2 10 of 4 3.80None
Virgin spermatheca0 00 of 4 0.96None
Mated spermatheca0 00 of 4 1.15None
Adult carcass1 00 of 4 1.80None
Larval CNS0 00 of 4 0.81None
Larval Salivary gland2 00 of 4 3.04None
Larval midgut1 00 of 4 1.50Up
Larval tubule1 00 of 4 1.70None
Larval hindgut0 00 of 4 1.15None
Larval fat body1 00 of 4 2.70None
Larval trachea0 00 of 4 0.81None
Larval carcass0 00 of 4 1.38Up
S2 cells (growing)1 00 of 4 3.04Up
Whole fly0 00 of 4

Looking for FBgn0085395. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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