FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085396 through 18771 annotations produced 2 hits

CG13141 (CG34367):

Annotation Number : CG5369
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085396
Gbrowse : chr2L:10351579-10353631 (-) // 100.0 //
Probeset : 1628086_at
Accessions : protein= NP_001097140; /// NP_001162934;, nucleotide= NM_001103670; /// NM_001169463;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0085396.
Homophila reports that CG5369 is a close match (2e-11) to human gene ARIX;CFEOM2;PHOX2A (NP_005160), a gene associated with Fibrosis of extraocular muscles, congenital, 2, 602078 (3).
VDRC has 4 RNAi stocks for FBgn0085396 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	1.90	None
Head	0 ± 0	0 of 4	0.40	None
Eye	0 ± 0	0 of 4	0.40	None
Thoracicoabdominal ganglion	9 ± 1	0 of 4	4.70	Up
Salivary gland	5 ± 3	0 of 4	2.56	None
Crop	1 ± 0	0 of 4	0.60	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	0 ± 0	0 of 4	0.30	Down
Hindgut	0 ± 0	0 of 4	0.40	None
Heart	0 ± 0	0 of 4	0.47	None
Fat body	1 ± 0	0 of 4	0.88	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	32 ± 3	2 of 4	16.50	Up
Male accessory glands	3 ± 2	0 of 4	2.00	None
Virgin spermatheca	0 ± 0	0 of 4	0.31	None
Mated spermatheca	1 ± 1	0 of 4	0.81	None
Adult carcass	1 ± 0	0 of 4	0.80	None
Larval CNS	6 ± 2	0 of 4	3.09	None
Larval Salivary gland	1 ± 0	0 of 4	0.54	None
Larval midgut	0 ± 0	0 of 4	0.46	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	0 of 4	0.51	None
Larval fat body	9 ± 6	0 of 4	4.80	None
Larval trachea	3 ± 2	0 of 4	1.64	None
Larval carcass	1 ± 0	0 of 4	0.73	None
S2 cells (growing)	0 ± 0	0 of 4	0.15	None
Whole fly	2 ± 0	0 of 4

CG13141 (CG34367):

Annotation Number : CG13141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085396
Gbrowse : chr2L:10348016-10349744 (-) // 100.0 //
Probeset : 1622997_at
Accessions : protein= NP_001097140; /// NP_001162934;, nucleotide= NM_001103670; /// NM_001169463;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0085396.
VDRC has 4 RNAi stocks for FBgn0085396 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	114 ± 2	4 of 4	17.80	Up
Head	28 ± 2	3 of 4	4.40	Up
Eye	2 ± 1	0 of 4	0.40	None
Thoracicoabdominal ganglion	157 ± 4	4 of 4	24.40	Up
Salivary gland	3 ± 0	0 of 4	0.49	None
Crop	1 ± 0	0 of 4	0.20	None
Midgut	1 ± 0	0 of 4	0.20	None
Tubule	0 ± 0	0 of 4	0.10	Down
Hindgut	0 ± 0	0 of 4	0.10	None
Heart	0 ± 0	0 of 4	0.06	None
Fat body	1 ± 0	0 of 4	0.20	None
Ovary	1 ± 0	0 of 4	0.20	None
Testis	145 ± 1	4 of 4	22.50	Up
Male accessory glands	1 ± 0	0 of 4	0.20	None
Virgin spermatheca	0 ± 0	0 of 4	0.14	None
Mated spermatheca	0 ± 0	0 of 4	0.12	None
Adult carcass	2 ± 1	0 of 4	0.40	None
Larval CNS	39 ± 6	4 of 4	6.12	Up
Larval Salivary gland	1 ± 0	0 of 4	0.21	None
Larval midgut	2 ± 1	0 of 4	0.41	None
Larval tubule	0 ± 0	0 of 4	0.10	None
Larval hindgut	0 ± 0	0 of 4	0.10	None
Larval fat body	9 ± 6	1 of 4	1.50	None
Larval trachea	0 ± 0	0 of 4	0.14	None
Larval carcass	1 ± 0	0 of 4	0.17	None
S2 cells (growing)	0 ± 0	0 of 4	0.10	None
Whole fly	6 ± 2	0 of 4

Looking for FBgn0085396. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720