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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085397 through 18771 annotations produced 3 hits



CG13487 (Fili):

Annotation Number : S.C2R002361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085397
Gbrowse : chr2R:17771005-17813856 (+) // 100.0 //
Probeset : 1631503_at
Accessions : protein= NP_001097402;, nucleotide= NM_001103932;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085397.
TRiP has 1 RNAi stocks for FBgn0085397 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 21 of 4 3.10None
Head8 01 of 4 3.40Up
Eye1 00 of 4 0.42None
Thoracicoabdominal ganglion5 20 of 4 2.10None
Salivary gland13 40 of 4 5.61None
Crop6 10 of 4 2.80Up
Midgut2 10 of 4 1.20None
Tubule5 00 of 4 2.30Up
Hindgut5 10 of 4 2.10None
Heart3 10 of 4 1.29None
Fat body8 50 of 4 3.46None
Ovary1 00 of 4 0.60None
Testis2 00 of 4 0.90None
Male accessory glands1 00 of 4 0.70None
Virgin spermatheca3 10 of 4 1.38None
Mated spermatheca4 00 of 4 1.70None
Adult carcass12 41 of 4 5.00None
Larval CNS2 20 of 4 1.08None
Larval Salivary gland6 20 of 4 2.58None
Larval midgut2 10 of 4 0.99None
Larval tubule3 10 of 4 1.50None
Larval hindgut1 00 of 4 0.60None
Larval fat body6 10 of 4 2.50None
Larval trachea2 20 of 4 0.90None
Larval carcass1 00 of 4 0.73None
S2 cells (growing)7 00 of 4 3.16Up
Whole fly2 10 of 4



CG13487 (Fili):

Annotation Number : CG13487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085397
Gbrowse : chr2R:17830450-17831981 (+) // 100.0 //
Probeset : 1628113_at
Accessions : protein= NP_001097402;, nucleotide= NM_001103932;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085397.
TRiP has 1 RNAi stocks for FBgn0085397 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 04 of 4 3.00Up
Head7 20 of 4 1.60None
Eye3 10 of 4 0.66None
Thoracicoabdominal ganglion11 31 of 4 2.30None
Salivary gland20 41 of 4 4.22Up
Crop6 20 of 4 1.40None
Midgut4 10 of 4 1.00None
Tubule2 00 of 4 0.50Down
Hindgut4 10 of 4 1.00None
Heart2 10 of 4 0.59None
Fat body7 10 of 4 1.59Up
Ovary1 00 of 4 0.20Down
Testis7 10 of 4 1.40None
Male accessory glands7 30 of 4 1.60None
Virgin spermatheca6 10 of 4 1.31None
Mated spermatheca5 20 of 4 1.07None
Adult carcass5 30 of 4 1.20None
Larval CNS10 20 of 4 2.20Up
Larval Salivary gland2 00 of 4 0.61None
Larval midgut3 00 of 4 0.69None
Larval tubule1 00 of 4 0.20Down
Larval hindgut1 00 of 4 0.32Down
Larval fat body12 11 of 4 2.60Up
Larval trachea4 20 of 4 1.03None
Larval carcass3 10 of 4 0.82None
S2 cells (growing)3 10 of 4 0.74None
Whole fly4 00 of 4



CG13487 (Fili):

Annotation Number : CG4054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085397
Gbrowse : chr2R:17817024-17818166 (+) // 100.0 //
Probeset : 1626772_at
Accessions : protein= NP_001097402;, nucleotide= NM_001103932;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085397.
Homophila reports that CG4054 is a close match (2e-13) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
TRiP has 1 RNAi stocks for FBgn0085397 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 2.30None
Head3 00 of 4 1.80None
Eye2 10 of 4 1.28None
Thoracicoabdominal ganglion2 10 of 4 1.50None
Salivary gland7 10 of 4 4.03Up
Crop2 00 of 4 1.20None
Midgut3 10 of 4 1.50None
Tubule2 00 of 4 1.40None
Hindgut1 00 of 4 0.70None
Heart2 10 of 4 1.49None
Fat body0 00 of 4 0.47None
Ovary1 00 of 4 0.70None
Testis2 10 of 4 1.30None
Male accessory glands3 10 of 4 1.70None
Virgin spermatheca2 10 of 4 1.29None
Mated spermatheca0 00 of 4 0.44None
Adult carcass4 10 of 4 2.40None
Larval CNS2 00 of 4 1.36None
Larval Salivary gland2 00 of 4 1.15None
Larval midgut3 10 of 4 2.01None
Larval tubule3 10 of 4 1.70None
Larval hindgut2 10 of 4 1.12None
Larval fat body2 00 of 4 1.10None
Larval trachea0 00 of 4 0.38None
Larval carcass2 00 of 4 1.03None
S2 cells (growing)1 00 of 4 0.94None
Whole fly2 00 of 4

Looking for FBgn0085397. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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