FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085397 through 18771 annotations produced 3 hits

CG13487 (Fili):

Annotation Number : CG4054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085397
Gbrowse : chr2R:17817024-17818166 (+) // 100.0 //
Probeset : 1626772_at
Accessions : protein= NP_001097402;, nucleotide= NM_001103932;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085397.
Homophila reports that CG4054 is a close match (2e-13) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
TRiP has 1 RNAi stocks for FBgn0085397 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085397 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	2.30	None
Head	3 ± 0	0 of 4	1.80	None
Eye	2 ± 1	0 of 4	1.28	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.50	None
Salivary gland	7 ± 1	0 of 4	4.03	Up
Crop	2 ± 0	0 of 4	1.20	None
Midgut	3 ± 1	0 of 4	1.50	None
Tubule	2 ± 0	0 of 4	1.40	None
Hindgut	1 ± 0	0 of 4	0.70	None
Heart	2 ± 1	0 of 4	1.49	None
Fat body	0 ± 0	0 of 4	0.47	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	2 ± 1	0 of 4	1.30	None
Male accessory glands	3 ± 1	0 of 4	1.70	None
Virgin spermatheca	2 ± 1	0 of 4	1.29	None
Mated spermatheca	0 ± 0	0 of 4	0.44	None
Adult carcass	4 ± 1	0 of 4	2.40	None
Larval CNS	2 ± 0	0 of 4	1.36	None
Larval Salivary gland	2 ± 0	0 of 4	1.15	None
Larval midgut	3 ± 1	0 of 4	2.01	None
Larval tubule	3 ± 1	0 of 4	1.70	None
Larval hindgut	2 ± 1	0 of 4	1.12	None
Larval fat body	2 ± 0	0 of 4	1.10	None
Larval trachea	0 ± 0	0 of 4	0.38	None
Larval carcass	2 ± 0	0 of 4	1.03	None
S2 cells (growing)	1 ± 0	0 of 4	0.94	None
Whole fly	2 ± 0	0 of 4

CG13487 (Fili):

Annotation Number : S.C2R002361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085397
Gbrowse : chr2R:17771005-17813856 (+) // 100.0 //
Probeset : 1631503_at
Accessions : protein= NP_001097402;, nucleotide= NM_001103932;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085397.
TRiP has 1 RNAi stocks for FBgn0085397 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085397 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 2	1 of 4	3.10	None
Head	8 ± 0	1 of 4	3.40	Up
Eye	1 ± 0	0 of 4	0.42	None
Thoracicoabdominal ganglion	5 ± 2	0 of 4	2.10	None
Salivary gland	13 ± 4	0 of 4	5.61	None
Crop	6 ± 1	0 of 4	2.80	Up
Midgut	2 ± 1	0 of 4	1.20	None
Tubule	5 ± 0	0 of 4	2.30	Up
Hindgut	5 ± 1	0 of 4	2.10	None
Heart	3 ± 1	0 of 4	1.29	None
Fat body	8 ± 5	0 of 4	3.46	None
Ovary	1 ± 0	0 of 4	0.60	None
Testis	2 ± 0	0 of 4	0.90	None
Male accessory glands	1 ± 0	0 of 4	0.70	None
Virgin spermatheca	3 ± 1	0 of 4	1.38	None
Mated spermatheca	4 ± 0	0 of 4	1.70	None
Adult carcass	12 ± 4	1 of 4	5.00	None
Larval CNS	2 ± 2	0 of 4	1.08	None
Larval Salivary gland	6 ± 2	0 of 4	2.58	None
Larval midgut	2 ± 1	0 of 4	0.99	None
Larval tubule	3 ± 1	0 of 4	1.50	None
Larval hindgut	1 ± 0	0 of 4	0.60	None
Larval fat body	6 ± 1	0 of 4	2.50	None
Larval trachea	2 ± 2	0 of 4	0.90	None
Larval carcass	1 ± 0	0 of 4	0.73	None
S2 cells (growing)	7 ± 0	0 of 4	3.16	Up
Whole fly	2 ± 1	0 of 4

CG13487 (Fili):

Annotation Number : CG13487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085397
Gbrowse : chr2R:17830450-17831981 (+) // 100.0 //
Probeset : 1628113_at
Accessions : protein= NP_001097402;, nucleotide= NM_001103932;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085397.
TRiP has 1 RNAi stocks for FBgn0085397 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085397 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 0	4 of 4	3.00	Up
Head	7 ± 2	0 of 4	1.60	None
Eye	3 ± 1	0 of 4	0.66	None
Thoracicoabdominal ganglion	11 ± 3	1 of 4	2.30	None
Salivary gland	20 ± 4	1 of 4	4.22	Up
Crop	6 ± 2	0 of 4	1.40	None
Midgut	4 ± 1	0 of 4	1.00	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	4 ± 1	0 of 4	1.00	None
Heart	2 ± 1	0 of 4	0.59	None
Fat body	7 ± 1	0 of 4	1.59	Up
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	7 ± 1	0 of 4	1.40	None
Male accessory glands	7 ± 3	0 of 4	1.60	None
Virgin spermatheca	6 ± 1	0 of 4	1.31	None
Mated spermatheca	5 ± 2	0 of 4	1.07	None
Adult carcass	5 ± 3	0 of 4	1.20	None
Larval CNS	10 ± 2	0 of 4	2.20	Up
Larval Salivary gland	2 ± 0	0 of 4	0.61	None
Larval midgut	3 ± 0	0 of 4	0.69	None
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	1 ± 0	0 of 4	0.32	Down
Larval fat body	12 ± 1	1 of 4	2.60	Up
Larval trachea	4 ± 2	0 of 4	1.03	None
Larval carcass	3 ± 1	0 of 4	0.82	None
S2 cells (growing)	3 ± 1	0 of 4	0.74	None
Whole fly	4 ± 0	0 of 4

Looking for FBgn0085397. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720