Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085398 through 18771 annotations produced 2 hits



CG13489 (CG34369):

Annotation Number : CG13490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085398
Gbrowse : chr2R:17855318-17856785 (+) // 100.0 //
Probeset : 1627712_at
Accessions : protein= NP_611622;, nucleotide= NM_137778;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0085398.
TRiP has 1 RNAi stocks for FBgn0085398 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 10 of 4 0.70None
Eye0 ± 00 of 4 0.15None
Thoracicoabdominal ganglion6 ± 20 of 4 1.60None
Salivary gland11 ± 10 of 4 2.94Up
Crop4 ± 10 of 4 1.10None
Midgut6 ± 00 of 4 1.70None
Tubule5 ± 00 of 4 1.30Up
Hindgut6 ± 10 of 4 1.70None
Heart4 ± 10 of 4 1.04None
Fat body4 ± 20 of 4 1.04None
Ovary1 ± 00 of 4 0.40None
Testis3 ± 00 of 4 0.90None
Male accessory glands6 ± 20 of 4 1.60None
Virgin spermatheca3 ± 00 of 4 0.89None
Mated spermatheca4 ± 00 of 4 1.17None
Adult carcass9 ± 20 of 4 2.40None
Larval CNS3 ± 10 of 4 1.00None
Larval Salivary gland3 ± 10 of 4 0.90None
Larval midgut6 ± 10 of 4 1.71None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut3 ± 00 of 4 0.75None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea1 ± 00 of 4 0.31None
Larval carcass9 ± 10 of 4 2.34None
S2 cells (growing)1 ± 00 of 4 0.25None
Whole fly3 ± 11 of 4



CG13489 (CG34369):

Annotation Number : CG13489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085398
Gbrowse : chr2R:17851677-17852208 (+) // 100.0 //
Probeset : 1639591_at
Accessions : protein= NP_611622;, nucleotide= NM_137778;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0085398.
TRiP has 1 RNAi stocks for FBgn0085398 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head8 ± 10 of 4 1.30None
Eye5 ± 10 of 4 0.79None
Thoracicoabdominal ganglion7 ± 30 of 4 1.20None
Salivary gland18 ± 22 of 4 2.89Up
Crop10 ± 23 of 4 1.60None
Midgut15 ± 33 of 4 2.40Up
Tubule7 ± 10 of 4 1.20None
Hindgut17 ± 24 of 4 2.60Up
Heart3 ± 00 of 4 0.48Down
Fat body10 ± 22 of 4 1.66Up
Ovary8 ± 12 of 4 1.20None
Testis5 ± 11 of 4 0.90None
Male accessory glands14 ± 40 of 4 2.20None
Virgin spermatheca6 ± 00 of 4 1.02None
Mated spermatheca9 ± 02 of 4 1.48None
Adult carcass12 ± 41 of 4 1.90None
Larval CNS5 ± 10 of 4 0.91None
Larval Salivary gland10 ± 30 of 4 1.57None
Larval midgut10 ± 20 of 4 1.66None
Larval tubule8 ± 11 of 4 1.40None
Larval hindgut11 ± 14 of 4 1.76None
Larval fat body12 ± 12 of 4 1.90Up
Larval trachea3 ± 31 of 4 0.53None
Larval carcass7 ± 12 of 4 1.18None
S2 cells (growing)8 ± 12 of 4 1.38None
Whole fly6 ± 10 of 4

Looking for FBgn0085398. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime