FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085399 through 18771 annotations produced 5 hits

CG13499 (CG34370):

Annotation Number : CG13499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17892409-17927063 (-) // 100.0 //
Probeset : 1626254_s_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 3	4 of 4	28.70	Up
Head	4 ± 1	0 of 4	3.90	None
Eye	1 ± 0	0 of 4	1.66	None
Thoracicoabdominal ganglion	14 ± 2	0 of 4	14.60	Up
Salivary gland	7 ± 1	0 of 4	7.07	Up
Crop	1 ± 0	0 of 4	1.70	None
Midgut	0 ± 0	0 of 4	0.90	None
Tubule	3 ± 0	0 of 4	3.20	Up
Hindgut	1 ± 0	0 of 4	1.20	None
Heart	3 ± 1	0 of 4	3.49	None
Fat body	1 ± 0	0 of 4	1.85	Up
Ovary	0 ± 0	0 of 4	0.90	None
Testis	0 ± 0	0 of 4	0.80	None
Male accessory glands	4 ± 2	0 of 4	4.20	None
Virgin spermatheca	2 ± 0	0 of 4	2.63	None
Mated spermatheca	2 ± 0	0 of 4	2.54	None
Adult carcass	6 ± 2	0 of 4	6.60	None
Larval CNS	1 ± 1	0 of 4	1.88	None
Larval Salivary gland	3 ± 0	0 of 4	2.88	None
Larval midgut	5 ± 2	0 of 4	5.59	None
Larval tubule	2 ± 1	0 of 4	2.80	None
Larval hindgut	1 ± 0	0 of 4	1.10	None
Larval fat body	4 ± 2	0 of 4	4.10	None
Larval trachea	1 ± 0	0 of 4	1.56	None
Larval carcass	3 ± 1	0 of 4	3.34	None
S2 cells (growing)	1 ± 0	0 of 4	1.41	None
Whole fly	1 ± 0	0 of 4

CG13499 (CG34370):

Annotation Number : CG13499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17892409-17927063 (-) // 100.0 //
Probeset : 1627543_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.80	None
Head	0 ± 0	0 of 4	0.30	None
Eye	2 ± 1	0 of 4	0.90	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.30	None
Salivary gland	8 ± 4	0 of 4	3.17	None
Crop	3 ± 1	0 of 4	1.10	None
Midgut	1 ± 0	0 of 4	0.60	None
Tubule	2 ± 0	0 of 4	0.80	Down
Hindgut	0 ± 0	0 of 4	0.30	None
Heart	1 ± 0	0 of 4	0.64	None
Fat body	1 ± 1	0 of 4	0.58	None
Ovary	1 ± 0	0 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.60	None
Male accessory glands	2 ± 0	0 of 4	0.90	None
Virgin spermatheca	3 ± 1	0 of 4	1.21	None
Mated spermatheca	1 ± 0	0 of 4	0.49	None
Adult carcass	3 ± 0	0 of 4	1.20	None
Larval CNS	0 ± 0	0 of 4	0.23	None
Larval Salivary gland	3 ± 2	0 of 4	1.46	None
Larval midgut	2 ± 1	0 of 4	1.03	None
Larval tubule	0 ± 0	0 of 4	0.30	None
Larval hindgut	1 ± 0	0 of 4	0.71	None
Larval fat body	0 ± 0	0 of 4	0.30	None
Larval trachea	1 ± 3	0 of 4	0.73	None
Larval carcass	2 ± 0	0 of 4	0.91	None
S2 cells (growing)	2 ± 0	0 of 4	0.80	None
Whole fly	2 ± 1	0 of 4

CG13499 (CG34370):

Annotation Number : Stencil:2R:17044570:17040137:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17884091-17888524 (-) // 100.0 //
Probeset : 1629049_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	4 of 4	4.90	Up
Head	5 ± 1	1 of 4	1.60	None
Eye	1 ± 0	0 of 4	0.48	None
Thoracicoabdominal ganglion	7 ± 2	2 of 4	2.40	None
Salivary gland	6 ± 2	0 of 4	2.02	None
Crop	3 ± 0	0 of 4	1.10	None
Midgut	3 ± 1	0 of 4	1.00	None
Tubule	3 ± 0	0 of 4	1.00	None
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	1 ± 0	0 of 4	0.57	None
Fat body	5 ± 2	0 of 4	1.62	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	3 ± 1	0 of 4	1.00	None
Male accessory glands	3 ± 0	0 of 4	1.00	None
Virgin spermatheca	3 ± 1	0 of 4	1.10	None
Mated spermatheca	1 ± 0	0 of 4	0.59	None
Adult carcass	3 ± 2	0 of 4	1.00	None
Larval CNS	7 ± 2	1 of 4	2.44	Up
Larval Salivary gland	4 ± 1	0 of 4	1.43	None
Larval midgut	3 ± 1	0 of 4	0.98	None
Larval tubule	5 ± 0	1 of 4	1.70	Up
Larval hindgut	2 ± 0	0 of 4	0.91	None
Larval fat body	4 ± 1	1 of 4	1.40	None
Larval trachea	2 ± 2	0 of 4	0.84	None
Larval carcass	3 ± 1	0 of 4	1.01	None
S2 cells (growing)	1 ± 0	0 of 4	0.59	None
Whole fly	3 ± 0	0 of 4

CG13499 (CG34370):

Annotation Number : CG30408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17875745-17877313 (-) // 98.25 //
Probeset : 1641740_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	78 ± 1	4 of 4	18.60	Up
Head	18 ± 2	4 of 4	4.40	Up
Eye	2 ± 1	0 of 4	0.70	None
Thoracicoabdominal ganglion	48 ± 6	4 of 4	11.40	Up
Salivary gland	3 ± 1	0 of 4	0.81	None
Crop	3 ± 1	0 of 4	0.80	None
Midgut	1 ± 0	0 of 4	0.30	Down
Tubule	1 ± 0	0 of 4	0.20	Down
Hindgut	0 ± 0	0 of 4	0.20	Down
Heart	1 ± 0	0 of 4	0.34	Down
Fat body	3 ± 2	0 of 4	0.91	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.40	Down
Male accessory glands	3 ± 1	0 of 4	0.80	None
Virgin spermatheca	2 ± 1	0 of 4	0.51	None
Mated spermatheca	0 ± 0	0 of 4	0.14	Down
Adult carcass	2 ± 1	0 of 4	0.50	None
Larval CNS	21 ± 1	4 of 4	4.97	Up
Larval Salivary gland	0 ± 0	0 of 4	0.18	Down
Larval midgut	2 ± 1	0 of 4	0.62	None
Larval tubule	0 ± 0	0 of 4	0.20	Down
Larval hindgut	1 ± 0	0 of 4	0.43	None
Larval fat body	2 ± 1	0 of 4	0.50	None
Larval trachea	0 ± 0	0 of 4	0.21	Down
Larval carcass	2 ± 0	0 of 4	0.66	None
S2 cells (growing)	0 ± 0	0 of 4	0.15	Down
Whole fly	4 ± 0	0 of 4

CG13499 (CG34370):

Annotation Number : CG30405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17880510-17883119 (-) // 100.0 //
Probeset : 1634611_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	32 ± 3	4 of 4	11.70	Up
Head	11 ± 5	1 of 4	4.20	None
Eye	2 ± 0	0 of 4	0.80	None
Thoracicoabdominal ganglion	17 ± 5	3 of 4	6.40	None
Salivary gland	8 ± 2	0 of 4	3.08	None
Crop	3 ± 2	0 of 4	1.30	None
Midgut	11 ± 1	0 of 4	4.10	Up
Tubule	4 ± 1	0 of 4	1.50	None
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	0 ± 0	0 of 4	0.17	Down
Fat body	4 ± 2	0 of 4	1.53	None
Ovary	1 ± 0	0 of 4	0.40	None
Testis	2 ± 1	0 of 4	0.90	None
Male accessory glands	4 ± 2	0 of 4	1.50	None
Virgin spermatheca	4 ± 1	0 of 4	1.49	None
Mated spermatheca	10 ± 3	0 of 4	3.66	None
Adult carcass	9 ± 2	0 of 4	3.40	Up
Larval CNS	6 ± 1	0 of 4	2.35	Up
Larval Salivary gland	4 ± 1	0 of 4	1.75	None
Larval midgut	7 ± 2	0 of 4	2.88	None
Larval tubule	3 ± 0	0 of 4	1.20	None
Larval hindgut	3 ± 1	0 of 4	1.24	None
Larval fat body	3 ± 0	0 of 4	1.40	None
Larval trachea	3 ± 1	0 of 4	1.10	None
Larval carcass	1 ± 0	0 of 4	0.58	None
S2 cells (growing)	2 ± 0	0 of 4	0.88	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0085399. 5 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720