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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085400 through 18771 annotations produced 1 hits



CG13548 (CG34371):

Annotation Number : CG30188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085400
Gbrowse : chr2R:19051934-19060729 (-) // 100.0 //
Probeset : 1634456_at
Accessions : protein= NP_611767;, nucleotide= NM_137923;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0085400.
Homophila reports that CG30188 is a close match (2e-16) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
VDRC has 2 RNAi stocks for FBgn0085400 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 22 of 4 2.80Up
Head17 ± 20 of 4 1.40None
Eye10 ± 31 of 4 0.87None
Thoracicoabdominal ganglion31 ± 30 of 4 2.50Up
Salivary gland17 ± 70 of 4 1.38None
Crop15 ± 20 of 4 1.20None
Midgut8 ± 20 of 4 0.70None
Tubule4 ± 00 of 4 0.40Down
Hindgut16 ± 11 of 4 1.40Up
Heart6 ± 20 of 4 0.51None
Fat body8 ± 50 of 4 0.64None
Ovary4 ± 00 of 4 0.30Down
Testis16 ± 10 of 4 1.30None
Male accessory glands3 ± 00 of 4 0.30Down
Virgin spermatheca7 ± 20 of 4 0.62None
Mated spermatheca2 ± 00 of 4 0.20Down
Adult carcass9 ± 60 of 4 0.80None
Larval CNS21 ± 10 of 4 1.70Up
Larval Salivary gland7 ± 10 of 4 0.60None
Larval midgut9 ± 30 of 4 0.79None
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut5 ± 10 of 4 0.40Down
Larval fat body15 ± 30 of 4 1.30None
Larval trachea1 ± 00 of 4 0.16Down
Larval carcass9 ± 30 of 4 0.74None
S2 cells (growing)3 ± 10 of 4 0.30Down
Whole fly12 ± 00 of 4

Looking for FBgn0085400. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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