FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085407 through 18771 annotations produced 3 hits

CG13783 (Pvf3):

Annotation Number : CG31629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085407
Gbrowse : chr2L:7100092-7133683 (-) // 100.0 //
Probeset : 1632817_at
Accessions : protein= NP_001097107; /// NP_001097108; /// NP_001097109;, nucleotide= NM_001103637; /// NM_001103638; /// NM_001103639;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085407.
BioGrid reports that CG31629 interacts with CG13780 CG7103 CG7641 CG4167 .
TRiP has 1 RNAi stocks for FBgn0085407 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	41 ± 0	4 of 4	10.60	Up
Head	18 ± 3	2 of 4	4.70	Up
Eye	0 ± 0	0 of 4	0.21	None
Thoracicoabdominal ganglion	21 ± 4	2 of 4	5.40	Up
Salivary gland	3 ± 0	0 of 4	0.81	None
Crop	1 ± 0	0 of 4	0.50	None
Midgut	2 ± 0	0 of 4	0.80	None
Tubule	3 ± 0	0 of 4	0.80	None
Hindgut	1 ± 0	0 of 4	0.40	None
Heart	4 ± 1	0 of 4	1.10	None
Fat body	2 ± 1	0 of 4	0.62	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	3 ± 0	0 of 4	0.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.36	None
Mated spermatheca	2 ± 0	0 of 4	0.54	None
Adult carcass	3 ± 0	0 of 4	0.80	None
Larval CNS	4 ± 2	0 of 4	1.10	None
Larval Salivary gland	3 ± 0	0 of 4	0.79	None
Larval midgut	1 ± 0	0 of 4	0.41	None
Larval tubule	9 ± 2	0 of 4	2.40	None
Larval hindgut	1 ± 0	0 of 4	0.28	None
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	1 ± 1	0 of 4	0.46	None
Larval carcass	1 ± 0	0 of 4	0.35	None
S2 cells (growing)	45 ± 3	4 of 4	11.84	Up
Whole fly	3 ± 1	0 of 4

CG13783 (Pvf3):

Annotation Number : CG13783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085407
Gbrowse : chr2L:7155456-7156697 (-) // 100.0 //
Probeset : 1637519_at
Accessions : protein= NP_001097107; /// NP_001097108; /// NP_001097109;, nucleotide= NM_001103637; /// NM_001103638; /// NM_001103639;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085407.
TRiP has 1 RNAi stocks for FBgn0085407 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 1	4 of 4	7.30	Up
Head	8 ± 2	1 of 4	1.90	None
Eye	1 ± 0	0 of 4	0.40	None
Thoracicoabdominal ganglion	14 ± 2	2 of 4	3.20	Up
Salivary gland	2 ± 0	0 of 4	0.55	None
Crop	3 ± 1	0 of 4	0.80	None
Midgut	1 ± 0	0 of 4	0.20	None
Tubule	2 ± 1	0 of 4	0.60	None
Hindgut	0 ± 0	0 of 4	0.20	None
Heart	1 ± 0	0 of 4	0.31	None
Fat body	3 ± 1	0 of 4	0.75	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	3 ± 1	1 of 4	0.80	None
Male accessory glands	9 ± 1	0 of 4	2.10	Up
Virgin spermatheca	1 ± 0	0 of 4	0.21	None
Mated spermatheca	3 ± 1	0 of 4	0.82	None
Adult carcass	3 ± 1	0 of 4	0.70	None
Larval CNS	2 ± 2	0 of 4	0.55	None
Larval Salivary gland	1 ± 0	0 of 4	0.34	None
Larval midgut	3 ± 0	0 of 4	0.63	None
Larval tubule	6 ± 1	0 of 4	1.50	None
Larval hindgut	2 ± 0	0 of 4	0.57	None
Larval fat body	5 ± 2	0 of 4	1.20	None
Larval trachea	2 ± 3	0 of 4	0.54	None
Larval carcass	1 ± 0	0 of 4	0.26	None
S2 cells (growing)	12 ± 1	3 of 4	2.76	Up
Whole fly	4 ± 1	0 of 4

CG13783 (Pvf3):

Annotation Number : CG31629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085407
Gbrowse : chr2L:7132391-7133683 (-) // 100.0 //
Probeset : 1632773_a_at
Accessions : protein= NP_001097107; /// NP_001097108; /// NP_001097109;, nucleotide= NM_001103637; /// NM_001103638; /// NM_001103639;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085407.
BioGrid reports that CG31629 interacts with CG13780 CG7103 CG7641 CG4167 .
TRiP has 1 RNAi stocks for FBgn0085407 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	0 of 4	5.50	Up
Head	3 ± 1	0 of 4	2.30	None
Eye	1 ± 1	0 of 4	1.37	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.00	None
Salivary gland	3 ± 1	0 of 4	2.46	None
Crop	1 ± 0	0 of 4	0.90	None
Midgut	4 ± 1	0 of 4	3.60	Up
Tubule	1 ± 0	0 of 4	1.20	None
Hindgut	1 ± 0	0 of 4	0.80	None
Heart	3 ± 0	0 of 4	2.54	None
Fat body	5 ± 3	0 of 4	4.33	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	0 ± 0	0 of 4	0.40	None
Male accessory glands	10 ± 3	0 of 4	7.80	None
Virgin spermatheca	2 ± 0	0 of 4	1.58	None
Mated spermatheca	5 ± 0	0 of 4	4.56	Up
Adult carcass	6 ± 2	0 of 4	5.10	None
Larval CNS	1 ± 1	0 of 4	0.90	None
Larval Salivary gland	1 ± 0	0 of 4	1.00	None
Larval midgut	2 ± 1	0 of 4	1.69	None
Larval tubule	1 ± 0	0 of 4	1.20	None
Larval hindgut	3 ± 1	0 of 4	2.42	None
Larval fat body	1 ± 1	0 of 4	1.50	None
Larval trachea	1 ± 1	0 of 4	0.90	None
Larval carcass	1 ± 0	0 of 4	1.23	None
S2 cells (growing)	2 ± 0	0 of 4	2.25	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0085407. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720