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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085407 through 18771 annotations produced 3 hits



CG13783 (Pvf3):

Annotation Number : CG31629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085407
Gbrowse : chr2L:7132391-7133683 (-) // 100.0 //
Probeset : 1632773_a_at
Accessions : protein= NP_001097107; /// NP_001097108; /// NP_001097109;, nucleotide= NM_001103637; /// NM_001103638; /// NM_001103639;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085407.
BioGrid reports that CG31629 interacts with CG13780 CG7103 CG7641 CG4167 .
TRiP has 1 RNAi stocks for FBgn0085407 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 5.50Up
Head3 10 of 4 2.30None
Eye1 10 of 4 1.37None
Thoracicoabdominal ganglion1 00 of 4 1.00None
Salivary gland3 10 of 4 2.46None
Crop1 00 of 4 0.90None
Midgut4 10 of 4 3.60Up
Tubule1 00 of 4 1.20None
Hindgut1 00 of 4 0.80None
Heart3 00 of 4 2.54None
Fat body5 30 of 4 4.33None
Ovary0 00 of 4 0.40None
Testis0 00 of 4 0.40None
Male accessory glands10 30 of 4 7.80None
Virgin spermatheca2 00 of 4 1.58None
Mated spermatheca5 00 of 4 4.56Up
Adult carcass6 20 of 4 5.10None
Larval CNS1 10 of 4 0.90None
Larval Salivary gland1 00 of 4 1.00None
Larval midgut2 10 of 4 1.69None
Larval tubule1 00 of 4 1.20None
Larval hindgut3 10 of 4 2.42None
Larval fat body1 10 of 4 1.50None
Larval trachea1 10 of 4 0.90None
Larval carcass1 00 of 4 1.23None
S2 cells (growing)2 00 of 4 2.25None
Whole fly1 00 of 4



CG13783 (Pvf3):

Annotation Number : CG13783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085407
Gbrowse : chr2L:7155456-7156697 (-) // 100.0 //
Probeset : 1637519_at
Accessions : protein= NP_001097107; /// NP_001097108; /// NP_001097109;, nucleotide= NM_001103637; /// NM_001103638; /// NM_001103639;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085407.
TRiP has 1 RNAi stocks for FBgn0085407 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 7.30Up
Head8 21 of 4 1.90None
Eye1 00 of 4 0.40None
Thoracicoabdominal ganglion14 22 of 4 3.20Up
Salivary gland2 00 of 4 0.55None
Crop3 10 of 4 0.80None
Midgut1 00 of 4 0.20None
Tubule2 10 of 4 0.60None
Hindgut0 00 of 4 0.20None
Heart1 00 of 4 0.31None
Fat body3 10 of 4 0.75None
Ovary1 00 of 4 0.30None
Testis3 11 of 4 0.80None
Male accessory glands9 10 of 4 2.10Up
Virgin spermatheca1 00 of 4 0.21None
Mated spermatheca3 10 of 4 0.82None
Adult carcass3 10 of 4 0.70None
Larval CNS2 20 of 4 0.55None
Larval Salivary gland1 00 of 4 0.34None
Larval midgut3 00 of 4 0.63None
Larval tubule6 10 of 4 1.50None
Larval hindgut2 00 of 4 0.57None
Larval fat body5 20 of 4 1.20None
Larval trachea2 30 of 4 0.54None
Larval carcass1 00 of 4 0.26None
S2 cells (growing)12 13 of 4 2.76Up
Whole fly4 10 of 4



CG13783 (Pvf3):

Annotation Number : CG31629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085407
Gbrowse : chr2L:7100092-7133683 (-) // 100.0 //
Probeset : 1632817_at
Accessions : protein= NP_001097107; /// NP_001097108; /// NP_001097109;, nucleotide= NM_001103637; /// NM_001103638; /// NM_001103639;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085407.
BioGrid reports that CG31629 interacts with CG13780 CG7103 CG7641 CG4167 .
TRiP has 1 RNAi stocks for FBgn0085407 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 04 of 410.60Up
Head18 32 of 4 4.70Up
Eye0 00 of 4 0.21None
Thoracicoabdominal ganglion21 42 of 4 5.40Up
Salivary gland3 00 of 4 0.81None
Crop1 00 of 4 0.50None
Midgut2 00 of 4 0.80None
Tubule3 00 of 4 0.80None
Hindgut1 00 of 4 0.40None
Heart4 10 of 4 1.10None
Fat body2 10 of 4 0.62None
Ovary0 00 of 4 0.20None
Testis0 00 of 4 0.20None
Male accessory glands3 00 of 4 0.80None
Virgin spermatheca1 00 of 4 0.36None
Mated spermatheca2 00 of 4 0.54None
Adult carcass3 00 of 4 0.80None
Larval CNS4 20 of 4 1.10None
Larval Salivary gland3 00 of 4 0.79None
Larval midgut1 00 of 4 0.41None
Larval tubule9 20 of 4 2.40None
Larval hindgut1 00 of 4 0.28None
Larval fat body1 00 of 4 0.50None
Larval trachea1 10 of 4 0.46None
Larval carcass1 00 of 4 0.35None
S2 cells (growing)45 34 of 411.84Up
Whole fly3 10 of 4

Looking for FBgn0085407. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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