FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085408 through 18771 annotations produced 3 hits

CG13942 (Shroom):

Annotation Number : CG8603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085408
Gbrowse : chr2R:10219899-10239312 (+) // 100.0 //
Probeset : 1629937_a_at
Accessions : protein= NP_001097307; /// NP_610952; /// NP_725378;, nucleotide= NM_001103837; /// NM_137108; /// NM_166047;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0085408.
Homophila reports that CG8603 is a close match (5e-16) to human gene KIAA1202;SDSX;SHROOM4 (NP_065768), a gene associated with Stocco dos Santos X-linked mental retardation syndrome, 300434 (3).
BioGrid reports that CG8603 interacts with CG9075 CG4820 CG1487 CG17327 .
TRiP has 1 RNAi stocks for FBgn0085408 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085408 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 1	4 of 4	0.40	Down
Head	64 ± 3	4 of 4	1.10	None
Eye	106 ± 10	4 of 4	1.86	Up
Thoracicoabdominal ganglion	34 ± 1	4 of 4	0.60	Down
Salivary gland	110 ± 4	4 of 4	1.92	Up
Crop	166 ± 5	4 of 4	2.90	Up
Midgut	310 ± 6	4 of 4	5.40	Up
Tubule	143 ± 10	4 of 4	2.50	Up
Hindgut	106 ± 2	4 of 4	1.90	Up
Heart	126 ± 7	4 of 4	2.19	Up
Fat body	38 ± 5	4 of 4	0.67	Down
Ovary	21 ± 1	4 of 4	0.40	Down
Testis	34 ± 2	4 of 4	0.60	Down
Male accessory glands	110 ± 7	4 of 4	1.90	Up
Virgin spermatheca	97 ± 6	4 of 4	1.70	Up
Mated spermatheca	119 ± 17	4 of 4	2.08	Up
Adult carcass	87 ± 8	4 of 4	1.50	Up
Larval CNS	31 ± 3	4 of 4	0.56	Down
Larval Salivary gland	362 ± 25	4 of 4	6.30	Up
Larval midgut	201 ± 41	4 of 4	3.51	Up
Larval tubule	288 ± 8	4 of 4	5.00	Up
Larval hindgut	118 ± 12	4 of 4	2.06	Up
Larval fat body	42 ± 2	4 of 4	0.70	Down
Larval trachea	172 ± 8	4 of 4	3.00	Up
Larval carcass	177 ± 22	4 of 4	3.09	Up
S2 cells (growing)	5 ± 0	0 of 4	0.10	Down
Whole fly	57 ± 4	4 of 4

CG13942 (Shroom):

Annotation Number : CT33491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085408
Gbrowse : chr2R:10202834-10203193 (+) // 100.0 //
Probeset : 1630913_at
Accessions : protein= NP_001097307; /// NP_610952; /// NP_725378;, nucleotide= NM_001103837; /// NM_137108; /// NM_166047;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0085408.
TRiP has 1 RNAi stocks for FBgn0085408 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085408 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.80	None
Head	4 ± 1	0 of 4	1.60	None
Eye	9 ± 1	2 of 4	3.36	Up
Thoracicoabdominal ganglion	3 ± 0	0 of 4	1.40	None
Salivary gland	11 ± 5	1 of 4	4.22	None
Crop	6 ± 2	1 of 4	2.30	None
Midgut	1 ± 0	0 of 4	0.60	None
Tubule	12 ± 1	2 of 4	4.60	Up
Hindgut	6 ± 0	1 of 4	2.40	Up
Heart	3 ± 1	1 of 4	1.40	None
Fat body	13 ± 6	4 of 4	4.88	Up
Ovary	3 ± 0	0 of 4	1.30	None
Testis	2 ± 1	0 of 4	1.00	None
Male accessory glands	5 ± 2	0 of 4	2.00	None
Virgin spermatheca	8 ± 1	3 of 4	3.17	Up
Mated spermatheca	12 ± 2	4 of 4	4.72	Up
Adult carcass	5 ± 2	1 of 4	2.20	None
Larval CNS	3 ± 1	0 of 4	1.19	None
Larval Salivary gland	2 ± 1	0 of 4	0.91	None
Larval midgut	2 ± 1	0 of 4	1.04	None
Larval tubule	9 ± 1	2 of 4	3.60	Up
Larval hindgut	4 ± 1	0 of 4	1.62	None
Larval fat body	8 ± 2	1 of 4	3.10	None
Larval trachea	8 ± 1	1 of 4	2.94	Up
Larval carcass	2 ± 1	0 of 4	0.91	None
S2 cells (growing)	3 ± 1	0 of 4	1.11	None
Whole fly	2 ± 1	0 of 4

CG13942 (Shroom):

Annotation Number : CG13942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085408
Gbrowse : chr2R:10213330-10217323 (+) // 100.0 //
Probeset : 1627487_at
Accessions : protein= NP_001097307; /// NP_610952; /// NP_725378;, nucleotide= NM_001103837; /// NM_137108; /// NM_166047;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0085408.
TRiP has 1 RNAi stocks for FBgn0085408 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085408 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.60	None
Head	3 ± 1	0 of 4	0.50	None
Eye	1 ± 0	0 of 4	0.30	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.80	None
Salivary gland	16 ± 3	0 of 4	2.72	Up
Crop	3 ± 1	0 of 4	0.60	None
Midgut	9 ± 1	0 of 4	1.60	None
Tubule	6 ± 1	1 of 4	1.10	None
Hindgut	3 ± 0	0 of 4	0.50	None
Heart	3 ± 1	0 of 4	0.56	None
Fat body	6 ± 3	0 of 4	1.10	None
Ovary	2 ± 0	0 of 4	0.30	None
Testis	4 ± 0	0 of 4	0.70	None
Male accessory glands	18 ± 3	3 of 4	3.00	Up
Virgin spermatheca	4 ± 1	0 of 4	0.77	None
Mated spermatheca	7 ± 0	1 of 4	1.31	None
Adult carcass	6 ± 1	0 of 4	1.00	None
Larval CNS	5 ± 2	0 of 4	0.93	None
Larval Salivary gland	8 ± 3	0 of 4	1.34	None
Larval midgut	4 ± 1	0 of 4	0.81	None
Larval tubule	21 ± 3	4 of 4	3.50	Up
Larval hindgut	5 ± 1	0 of 4	0.97	None
Larval fat body	5 ± 3	0 of 4	1.00	None
Larval trachea	4 ± 3	0 of 4	0.67	None
Larval carcass	8 ± 1	0 of 4	1.32	None
S2 cells (growing)	6 ± 1	0 of 4	1.02	None
Whole fly	6 ± 1	0 of 4

Looking for FBgn0085408. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720