FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085409 through 18771 annotations produced 2 hits

CG13988 (CG34380):

Annotation Number : CG13988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085409
Gbrowse : chr2L:6190470-6190722 (+) // 100.0 //
Probeset : 1629988_at
Accessions : protein= NP_001097097;, nucleotide= NM_001103627;
Interpro : 0004716 // receptor signaling protein tyrosine kinase activity // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085409.
VDRC has 3 RNAi stocks for FBgn0085409 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 1	2 of 4	2.10	Up
Head	10 ± 2	0 of 4	1.20	None
Eye	6 ± 1	0 of 4	0.74	None
Thoracicoabdominal ganglion	16 ± 2	2 of 4	2.00	Up
Salivary gland	44 ± 5	3 of 4	5.43	Up
Crop	15 ± 2	1 of 4	1.90	None
Midgut	13 ± 1	0 of 4	1.70	None
Tubule	10 ± 1	0 of 4	1.30	Up
Hindgut	8 ± 1	1 of 4	1.10	None
Heart	3 ± 0	0 of 4	0.37	None
Fat body	13 ± 7	0 of 4	1.67	None
Ovary	5 ± 0	0 of 4	0.60	None
Testis	8 ± 1	0 of 4	1.00	None
Male accessory glands	14 ± 4	0 of 4	1.70	None
Virgin spermatheca	9 ± 1	0 of 4	1.20	None
Mated spermatheca	10 ± 1	0 of 4	1.23	None
Adult carcass	15 ± 3	0 of 4	1.80	None
Larval CNS	8 ± 3	0 of 4	0.98	None
Larval Salivary gland	15 ± 2	2 of 4	1.83	None
Larval midgut	19 ± 3	0 of 4	2.36	Up
Larval tubule	11 ± 1	0 of 4	1.30	None
Larval hindgut	11 ± 1	1 of 4	1.44	None
Larval fat body	19 ± 2	0 of 4	2.40	Up
Larval trachea	7 ± 3	1 of 4	0.85	None
Larval carcass	13 ± 1	0 of 4	1.69	None
S2 cells (growing)	8 ± 0	0 of 4	1.09	None
Whole fly	8 ± 2	0 of 4

CG13988 (CG34380):

Annotation Number : CG31640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085409
Gbrowse : chr2L:6196442-6208884 (+) // 100.0 //
Probeset : 1637838_at
Accessions : protein= NP_001097097;, nucleotide= NM_001103627;
Interpro : 0004716 // receptor signaling protein tyrosine kinase activity // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0085409.
VDRC has 3 RNAi stocks for FBgn0085409 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	96 ± 4	4 of 4	8.90	Up
Head	19 ± 2	3 of 4	1.80	Up
Eye	19 ± 0	4 of 4	1.79	Up
Thoracicoabdominal ganglion	81 ± 4	4 of 4	7.60	Up
Salivary gland	29 ± 2	1 of 4	2.73	Up
Crop	45 ± 3	4 of 4	4.20	Up
Midgut	13 ± 1	0 of 4	1.20	None
Tubule	6 ± 1	0 of 4	0.60	Down
Hindgut	1 ± 0	0 of 4	0.10	Down
Heart	11 ± 2	2 of 4	1.05	None
Fat body	4 ± 3	0 of 4	0.44	Down
Ovary	2 ± 1	0 of 4	0.30	Down
Testis	3 ± 1	0 of 4	0.30	Down
Male accessory glands	50 ± 4	4 of 4	4.70	Up
Virgin spermatheca	7 ± 2	0 of 4	0.70	None
Mated spermatheca	10 ± 3	0 of 4	0.96	None
Adult carcass	10 ± 4	0 of 4	0.90	None
Larval CNS	71 ± 11	4 of 4	6.62	Up
Larval Salivary gland	17 ± 2	0 of 4	1.63	Up
Larval midgut	8 ± 2	0 of 4	0.75	None
Larval tubule	7 ± 1	0 of 4	0.70	None
Larval hindgut	2 ± 1	0 of 4	0.25	Down
Larval fat body	10 ± 4	0 of 4	1.00	None
Larval trachea	15 ± 1	4 of 4	1.43	Up
Larval carcass	5 ± 2	0 of 4	0.55	None
S2 cells (growing)	9 ± 1	0 of 4	0.84	None
Whole fly	10 ± 1	0 of 4

Looking for FBgn0085409. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720