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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085410 through 18771 annotations produced 2 hits



chr2L:5848454-5856378 (+) // 100.0 // (CG14004):

Annotation Number : CG31645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633531_at
Accessions : protein= , nucleotide= NP_001097092; /// NP_608962;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
FlyMine data for full length.
Homophila reports that CG31645 is a close match (7e-12) to human gene ADRB2 (NP_000015), a gene associated with Beta-2-adrenoreceptor agonist, reduced response to (3);{Asthma, nocturnal, susceptibility to}, 600807 (3);{Obesity, susceptibility to}, 601665 (3).
BioGrid reports that CG31645 interacts with CG4027 CG17726 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 54 of 4 6.10Up
Head25 ± 24 of 4 2.50Up
Eye11 ± 12 of 4 1.09None
Thoracicoabdominal ganglion49 ± 24 of 4 4.90Up
Salivary gland9 ± 10 of 4 0.93None
Crop48 ± 24 of 4 4.70Up
Midgut16 ± 30 of 4 1.60None
Tubule6 ± 10 of 4 0.70Down
Hindgut21 ± 13 of 4 2.10Up
Heart12 ± 11 of 4 1.26None
Fat body8 ± 40 of 4 0.79None
Ovary8 ± 20 of 4 0.90None
Testis7 ± 10 of 4 0.70None
Male accessory glands27 ± 23 of 4 2.60Up
Virgin spermatheca21 ± 40 of 4 2.06None
Mated spermatheca28 ± 11 of 4 2.77Up
Adult carcass11 ± 30 of 4 1.20None
Larval CNS23 ± 44 of 4 2.33Up
Larval Salivary gland2 ± 00 of 4 0.23Down
Larval midgut10 ± 10 of 4 1.01None
Larval tubule3 ± 10 of 4 0.40Down
Larval hindgut5 ± 10 of 4 0.57None
Larval fat body7 ± 20 of 4 0.80None
Larval trachea8 ± 43 of 4 0.84None
Larval carcass5 ± 10 of 4 0.58None
S2 cells (growing)7 ± 20 of 4 0.74None
Whole fly10 ± 12 of 4



CG14004 (CG34381):

Annotation Number : CG14004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085410
Gbrowse : chr2L:5845351-5845960 (+) // 100.0 //
Probeset : 1639066_at
Accessions : protein= NP_001097092; /// NP_608962;, nucleotide= NM_001103622; /// NM_135118; /// NM_135118;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : "0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferr
FlyMine data for FBgn0085410.
TRiP has 1 RNAi stocks for FBgn0085410 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 4 5.90Up
Head3 ± 10 of 4 0.80None
Eye3 ± 20 of 4 0.83None
Thoracicoabdominal ganglion14 ± 13 of 4 3.80Up
Salivary gland9 ± 20 of 4 2.38None
Crop27 ± 24 of 4 7.10Up
Midgut7 ± 10 of 4 1.90None
Tubule4 ± 00 of 4 1.20None
Hindgut6 ± 10 of 4 1.60None
Heart4 ± 00 of 4 1.09None
Fat body3 ± 10 of 4 0.82None
Ovary4 ± 10 of 4 1.10None
Testis3 ± 10 of 4 0.90None
Male accessory glands12 ± 20 of 4 3.30None
Virgin spermatheca5 ± 11 of 4 1.32None
Mated spermatheca8 ± 13 of 4 2.12Up
Adult carcass6 ± 10 of 4 1.80None
Larval CNS7 ± 24 of 4 2.07None
Larval Salivary gland8 ± 10 of 4 2.28None
Larval midgut5 ± 20 of 4 1.36None
Larval tubule4 ± 10 of 4 1.10None
Larval hindgut8 ± 12 of 4 2.11None
Larval fat body5 ± 10 of 4 1.50None
Larval trachea5 ± 10 of 4 1.38None
Larval carcass9 ± 10 of 4 2.43None
S2 cells (growing)4 ± 01 of 4 1.12None
Whole fly3 ± 10 of 4

Looking for FBgn0085410. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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