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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085415 through 18771 annotations produced 2 hits



CG14496 (CG34386):

Annotation Number : CG14496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085415
Gbrowse : chr2R:13977532-13978174 (+) // 100.0 //
Probeset : 1628010_at
Accessions : protein= NP_001097362;, nucleotide= NM_001103892;
FlyMine data for FBgn0085415.
VDRC has 4 RNAi stocks for FBgn0085415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.50None
Eye4 ± 00 of 4 0.77None
Thoracicoabdominal ganglion2 ± 10 of 4 0.50None
Salivary gland9 ± 40 of 4 1.56None
Crop1 ± 10 of 4 0.20None
Midgut44 ± 44 of 4 7.00Up
Tubule3 ± 00 of 4 0.50Down
Hindgut4 ± 10 of 4 0.70None
Heart4 ± 10 of 4 0.75None
Fat body6 ± 10 of 4 0.96None
Ovary0 ± 00 of 4 0.10None
Testis6 ± 01 of 4 1.00None
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.30None
Mated spermatheca2 ± 00 of 4 0.43None
Adult carcass3 ± 10 of 4 0.50None
Larval CNS2 ± 01 of 4 0.46None
Larval Salivary gland4 ± 10 of 4 0.68None
Larval midgut24 ± 14 of 4 3.82Up
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut3 ± 10 of 4 0.58None
Larval fat body7 ± 20 of 4 1.20None
Larval trachea5 ± 10 of 4 0.83None
Larval carcass5 ± 10 of 4 0.88None
S2 cells (growing)1 ± 00 of 4 0.28None
Whole fly6 ± 13 of 4



CG14496 (CG34386):

Annotation Number : CG14497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085415
Gbrowse : chr2R:13980063-13980972 (+) // 100.0 //
Probeset : 1624512_at
Accessions : protein= NP_001097362;, nucleotide= NM_001103892;
FlyMine data for FBgn0085415.
VDRC has 4 RNAi stocks for FBgn0085415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.13Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland13 ± 10 of 4 0.92None
Crop1 ± 00 of 4 0.10Down
Midgut200 ± 124 of 413.80Up
Tubule4 ± 00 of 4 0.30Down
Hindgut2 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.08Down
Fat body1 ± 00 of 4 0.11Down
Ovary1 ± 00 of 4 0.10Down
Testis14 ± 20 of 4 1.00None
Male accessory glands4 ± 00 of 4 0.30Down
Virgin spermatheca3 ± 00 of 4 0.23Down
Mated spermatheca3 ± 00 of 4 0.22Down
Adult carcass4 ± 00 of 4 0.30Down
Larval CNS1 ± 00 of 4 0.07Down
Larval Salivary gland2 ± 00 of 4 0.17Down
Larval midgut104 ± 24 of 4 7.20Up
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.18Down
Larval fat body5 ± 10 of 4 0.40None
Larval trachea3 ± 20 of 4 0.27Down
Larval carcass1 ± 00 of 4 0.13Down
S2 cells (growing)2 ± 00 of 4 0.14Down
Whole fly14 ± 30 of 4

Looking for FBgn0085415. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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