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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085421 through 18771 annotations produced 1 hits



Epac (Epac):

Annotation Number : CG3427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085421
Gbrowse : chr2R:2649416-2676511 (-) // 100.0 //
Probeset : 1631112_at
Accessions : protein= NP_001097202; /// NP_724498;, nucleotide= NM_001103732; /// NM_165490;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex //
Interpro : 0004691 // cAMP-dependent protein kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotid
FlyMine data for FBgn0085421.
Homophila reports that CG3427 is a close match (6e-17) to human gene GF1;GINGF;HGF;NS4;SOS1 (NP_005624), a gene associated with Fibromatosis, gingival, 135300 (3);Noonan syndrome 4, 610733 (3).
BioGrid reports that CG3427 interacts with CG3831 CG4196 CG4415 CG4463 CG4488 CG4729 CG4759 CG4965 CG5248 CG5468 CG5515 CG5671 CG6045 CG6817 CG7113 CG7211 CG7933 CG7949 CG8206 CG8620 CG8929 CG9916 .
TRiP has 1 RNAi stocks for FBgn0085421 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085421 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 ± 54 of 4 3.00Up
Head73 ± 54 of 4 2.00Up
Eye247 ± 354 of 4 6.63Up
Thoracicoabdominal ganglion48 ± 44 of 4 1.30None
Salivary gland4 ± 30 of 4 0.13Down
Crop14 ± 21 of 4 0.40Down
Midgut120 ± 14 of 4 3.20Up
Tubule59 ± 54 of 4 1.60Up
Hindgut30 ± 23 of 4 0.80Down
Heart4 ± 10 of 4 0.12Down
Fat body6 ± 20 of 4 0.18Down
Ovary42 ± 24 of 4 1.10None
Testis77 ± 74 of 4 2.10Up
Male accessory glands74 ± 14 of 4 2.00Up
Virgin spermatheca119 ± 104 of 4 3.21Up
Mated spermatheca145 ± 304 of 4 3.89Up
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS38 ± 54 of 4 1.04None
Larval Salivary gland2 ± 00 of 4 0.05Down
Larval midgut222 ± 134 of 4 5.96Up
Larval tubule106 ± 24 of 4 2.80Up
Larval hindgut73 ± 34 of 4 1.97Up
Larval fat body15 ± 41 of 4 0.40Down
Larval trachea7 ± 60 of 4 0.21Down
Larval carcass26 ± 51 of 4 0.70None
S2 cells (growing)55 ± 24 of 4 1.49Up
Whole fly37 ± 04 of 4

Looking for FBgn0085421. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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