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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085423 through 18771 annotations produced 2 hits



CG15411 (CG34394):

Annotation Number : CG3304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085423
Gbrowse : chr2L:3360717-3368598 (-) // 100.0 //
Probeset : 1630694_at
Accessions : protein= NP_001097068; /// NP_001097069; /// NP_001097071;, nucleotide= NM_001103598; /// NM_001103599; /// NM_001103601;
FlyMine data for FBgn0085423.
TRiP has 1 RNAi stocks for FBgn0085423 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085423 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 1.10None
Head17 ± 54 of 4 0.60None
Eye5 ± 21 of 4 0.18Down
Thoracicoabdominal ganglion20 ± 24 of 4 0.70Down
Salivary gland18 ± 20 of 4 0.59Down
Crop14 ± 24 of 4 0.50Down
Midgut27 ± 34 of 4 0.90None
Tubule12 ± 11 of 4 0.40Down
Hindgut17 ± 13 of 4 0.60Down
Heart14 ± 04 of 4 0.48Down
Fat body24 ± 44 of 4 0.79None
Ovary44 ± 24 of 4 1.50Up
Testis37 ± 14 of 4 1.20Up
Male accessory glands16 ± 00 of 4 0.50Down
Virgin spermatheca12 ± 04 of 4 0.41Down
Mated spermatheca7 ± 13 of 4 0.23Down
Adult carcass17 ± 14 of 4 0.60Down
Larval CNS10 ± 04 of 4 0.35Down
Larval Salivary gland8 ± 21 of 4 0.28Down
Larval midgut9 ± 20 of 4 0.32Down
Larval tubule13 ± 13 of 4 0.50Down
Larval hindgut7 ± 01 of 4 0.25Down
Larval fat body20 ± 13 of 4 0.70Down
Larval trachea4 ± 11 of 4 0.16Down
Larval carcass3 ± 10 of 4 0.10Down
S2 cells (growing)30 ± 14 of 4 0.99None
Whole fly30 ± 24 of 4



CG15411 (CG34394):

Annotation Number : CG15411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085423
Gbrowse : chr2L:3372774-3373047 (-) // 100.0 //
Probeset : 1641663_at
Accessions : protein= NP_001097068; /// NP_001097069; /// NP_001097071;, nucleotide= NM_001103598; /// NM_001103599; /// NM_001103601;
FlyMine data for FBgn0085423.
TRiP has 1 RNAi stocks for FBgn0085423 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085423 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 00 of 4 0.90None
Head8 ± 00 of 4 0.60None
Eye11 ± 32 of 4 0.79None
Thoracicoabdominal ganglion10 ± 40 of 4 0.70None
Salivary gland26 ± 80 of 4 1.77None
Crop13 ± 20 of 4 0.90None
Midgut23 ± 12 of 4 1.60Up
Tubule12 ± 10 of 4 0.90None
Hindgut14 ± 10 of 4 1.00None
Heart8 ± 20 of 4 0.56None
Fat body25 ± 81 of 4 1.70None
Ovary7 ± 10 of 4 0.50Down
Testis6 ± 10 of 4 0.40Down
Male accessory glands16 ± 30 of 4 1.10None
Virgin spermatheca16 ± 21 of 4 1.08None
Mated spermatheca17 ± 10 of 4 1.17None
Adult carcass33 ± 71 of 4 2.20None
Larval CNS8 ± 70 of 4 0.54None
Larval Salivary gland5 ± 10 of 4 0.39Down
Larval midgut9 ± 20 of 4 0.63None
Larval tubule9 ± 40 of 4 0.60None
Larval hindgut10 ± 40 of 4 0.73None
Larval fat body19 ± 30 of 4 1.30None
Larval trachea14 ± 50 of 4 0.97None
Larval carcass15 ± 10 of 4 1.05None
S2 cells (growing)8 ± 10 of 4 0.60None
Whole fly14 ± 20 of 4

Looking for FBgn0085423. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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