FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085424 through 18771 annotations produced 3 hits

CG15488 (nub):

Annotation Number : CG15489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085424
Gbrowse : chr2L:12593787-12594690 (+) // 100.0 //
Probeset : 1626836_at
Accessions : protein= NP_001097153; /// NP_476659;, nucleotide= NM_001103683; /// NM_057311;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0085424.
TRiP has 1 RNAi stocks for FBgn0085424 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085424 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.20	Down
Head	3 ± 1	0 of 4	0.50	None
Eye	6 ± 1	0 of 4	0.94	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.40	Down
Salivary gland	17 ± 5	0 of 4	2.53	None
Crop	3 ± 1	0 of 4	0.50	None
Midgut	10 ± 1	0 of 4	1.60	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	5 ± 1	0 of 4	0.90	None
Heart	3 ± 1	1 of 4	0.49	None
Fat body	3 ± 1	0 of 4	0.58	Down
Ovary	3 ± 1	0 of 4	0.50	None
Testis	2 ± 0	0 of 4	0.30	Down
Male accessory glands	2 ± 1	0 of 4	0.40	Down
Virgin spermatheca	4 ± 1	0 of 4	0.72	None
Mated spermatheca	4 ± 2	0 of 4	0.72	None
Adult carcass	4 ± 2	0 of 4	0.70	None
Larval CNS	2 ± 0	0 of 4	0.40	Down
Larval Salivary gland	7 ± 2	0 of 4	1.13	None
Larval midgut	7 ± 1	0 of 4	1.07	None
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	2 ± 1	0 of 4	0.35	Down
Larval fat body	2 ± 0	0 of 4	0.40	Down
Larval trachea	2 ± 2	0 of 4	0.39	Down
Larval carcass	9 ± 1	0 of 4	1.40	None
S2 cells (growing)	6 ± 0	0 of 4	0.92	None
Whole fly	6 ± 0	0 of 4

CG15488 (nub):

Annotation Number : CG15488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085424
Gbrowse : chr2L:12613788-12614220 (+) // 100.0 //
Probeset : 1630736_at
Accessions : protein= NP_001097153; /// NP_476659;, nucleotide= NM_001103683; /// NM_057311;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0085424.
TRiP has 1 RNAi stocks for FBgn0085424 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085424 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	2.30	None
Head	4 ± 0	0 of 4	3.30	Up
Eye	2 ± 0	0 of 4	1.63	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.10	None
Salivary gland	8 ± 2	0 of 4	6.96	Up
Crop	0 ± 0	0 of 4	0.60	None
Midgut	8 ± 0	0 of 4	6.60	Up
Tubule	3 ± 0	0 of 4	2.80	Up
Hindgut	3 ± 1	1 of 4	3.10	None
Heart	1 ± 0	0 of 4	0.78	None
Fat body	3 ± 3	0 of 4	2.37	None
Ovary	0 ± 0	0 of 4	0.60	None
Testis	3 ± 1	0 of 4	2.40	None
Male accessory glands	1 ± 0	0 of 4	1.40	None
Virgin spermatheca	3 ± 1	0 of 4	2.43	None
Mated spermatheca	2 ± 0	0 of 4	1.55	None
Adult carcass	2 ± 1	0 of 4	2.10	None
Larval CNS	1 ± 1	0 of 4	1.41	None
Larval Salivary gland	1 ± 0	0 of 4	1.04	None
Larval midgut	2 ± 0	0 of 4	2.10	None
Larval tubule	3 ± 1	1 of 4	2.60	None
Larval hindgut	1 ± 1	0 of 4	1.29	None
Larval fat body	4 ± 1	0 of 4	3.50	None
Larval trachea	2 ± 2	0 of 4	1.80	None
Larval carcass	2 ± 0	0 of 4	1.98	None
S2 cells (growing)	1 ± 0	0 of 4	1.35	None
Whole fly	1 ± 0	0 of 4

CG15488 (nub):

Annotation Number : CG6246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085424
Gbrowse : chr2L:12618347-12628134 (+) // 100.0 //
Probeset : 1639500_at
Accessions : protein= NP_001097153; /// NP_476659;, nucleotide= NM_001103683; /// NM_057311;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0085424.
Homophila reports that CG6246 is a close match (2e-13) to human gene POU6F2;WT5;WTSL (NP_009183), a gene associated with {Wilms tumor susceptibility-5}, 601583 (3).
BioGrid reports that CG6246 interacts with CG3352 CG4889 CG16904 CG16947 CG17567 CG17666 CG17934 CG17945 CG17946 CG18145 CG31140 CG31839 CG32767 Dmel CG34168 CG5791 CG7570 CG8360 CG8854 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0085424 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085424 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	0.30	Down
Head	13 ± 1	4 of 4	0.20	Down
Eye	3 ± 1	1 of 4	0.05	Down
Thoracicoabdominal ganglion	33 ± 0	4 of 4	0.50	None
Salivary gland	5 ± 3	0 of 4	0.09	Down
Crop	4 ± 1	1 of 4	0.10	Down
Midgut	647 ± 30	4 of 4	10.50	Up
Tubule	7 ± 1	1 of 4	0.10	Down
Hindgut	102 ± 5	4 of 4	1.70	Up
Heart	1 ± 0	0 of 4	0.02	Down
Fat body	14 ± 5	4 of 4	0.23	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	8 ± 1	4 of 4	0.10	Down
Male accessory glands	8 ± 2	0 of 4	0.10	Down
Virgin spermatheca	6 ± 1	3 of 4	0.10	Down
Mated spermatheca	13 ± 4	3 of 4	0.22	Down
Adult carcass	11 ± 2	0 of 4	0.20	Down
Larval CNS	64 ± 10	4 of 4	1.04	None
Larval Salivary gland	4 ± 1	0 of 4	0.07	Down
Larval midgut	288 ± 19	4 of 4	4.69	Up
Larval tubule	6 ± 0	0 of 4	0.10	Down
Larval hindgut	53 ± 5	4 of 4	0.86	None
Larval fat body	1 ± 0	0 of 4	0.00	Down
Larval trachea	6 ± 3	2 of 4	0.11	Down
Larval carcass	18 ± 3	4 of 4	0.31	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	61 ± 10	4 of 4

Looking for FBgn0085424. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720