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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085424 through 18771 annotations produced 3 hits



CG15488 (nub):

Annotation Number : CG6246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085424
Gbrowse : chr2L:12618347-12628134 (+) // 100.0 //
Probeset : 1639500_at
Accessions : protein= NP_001097153; /// NP_476659;, nucleotide= NM_001103683; /// NM_057311;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0085424.
Homophila reports that CG6246 is a close match (2e-13) to human gene POU6F2;WT5;WTSL (NP_009183), a gene associated with {Wilms tumor susceptibility-5}, 601583 (3).
BioGrid reports that CG6246 interacts with CG3352 CG4889 CG16904 CG16947 CG17567 CG17666 CG17934 CG17945 CG17946 CG18145 CG31140 CG31839 CG32767 Dmel CG34168 CG5791 CG7570 CG8360 CG8854 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0085424 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.30Down
Head13 14 of 4 0.20Down
Eye3 11 of 4 0.05Down
Thoracicoabdominal ganglion33 04 of 4 0.50None
Salivary gland5 30 of 4 0.09Down
Crop4 11 of 4 0.10Down
Midgut647 304 of 410.50Up
Tubule7 11 of 4 0.10Down
Hindgut102 54 of 4 1.70Up
Heart1 00 of 4 0.02Down
Fat body14 54 of 4 0.23Down
Ovary0 00 of 4 0.00Down
Testis8 14 of 4 0.10Down
Male accessory glands8 20 of 4 0.10Down
Virgin spermatheca6 13 of 4 0.10Down
Mated spermatheca13 43 of 4 0.22Down
Adult carcass11 20 of 4 0.20Down
Larval CNS64 104 of 4 1.04None
Larval Salivary gland4 10 of 4 0.07Down
Larval midgut288 194 of 4 4.69Up
Larval tubule6 00 of 4 0.10Down
Larval hindgut53 54 of 4 0.86None
Larval fat body1 00 of 4 0.00Down
Larval trachea6 32 of 4 0.11Down
Larval carcass18 34 of 4 0.31Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly61 104 of 4



CG15488 (nub):

Annotation Number : CG15489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085424
Gbrowse : chr2L:12593787-12594690 (+) // 100.0 //
Probeset : 1626836_at
Accessions : protein= NP_001097153; /// NP_476659;, nucleotide= NM_001103683; /// NM_057311;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0085424.
TRiP has 1 RNAi stocks for FBgn0085424 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head3 10 of 4 0.50None
Eye6 10 of 4 0.94None
Thoracicoabdominal ganglion2 10 of 4 0.40Down
Salivary gland17 50 of 4 2.53None
Crop3 10 of 4 0.50None
Midgut10 10 of 4 1.60None
Tubule1 00 of 4 0.30Down
Hindgut5 10 of 4 0.90None
Heart3 11 of 4 0.49None
Fat body3 10 of 4 0.58Down
Ovary3 10 of 4 0.50None
Testis2 00 of 4 0.30Down
Male accessory glands2 10 of 4 0.40Down
Virgin spermatheca4 10 of 4 0.72None
Mated spermatheca4 20 of 4 0.72None
Adult carcass4 20 of 4 0.70None
Larval CNS2 00 of 4 0.40Down
Larval Salivary gland7 20 of 4 1.13None
Larval midgut7 10 of 4 1.07None
Larval tubule1 00 of 4 0.20Down
Larval hindgut2 10 of 4 0.35Down
Larval fat body2 00 of 4 0.40Down
Larval trachea2 20 of 4 0.39Down
Larval carcass9 10 of 4 1.40None
S2 cells (growing)6 00 of 4 0.92None
Whole fly6 00 of 4



CG15488 (nub):

Annotation Number : CG15488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085424
Gbrowse : chr2L:12613788-12614220 (+) // 100.0 //
Probeset : 1630736_at
Accessions : protein= NP_001097153; /// NP_476659;, nucleotide= NM_001103683; /// NM_057311;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0085424.
TRiP has 1 RNAi stocks for FBgn0085424 available for purchase.
VDRC has 8 RNAi stocks for FBgn0085424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 2.30None
Head4 00 of 4 3.30Up
Eye2 00 of 4 1.63None
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland8 20 of 4 6.96Up
Crop0 00 of 4 0.60None
Midgut8 00 of 4 6.60Up
Tubule3 00 of 4 2.80Up
Hindgut3 11 of 4 3.10None
Heart1 00 of 4 0.78None
Fat body3 30 of 4 2.37None
Ovary0 00 of 4 0.60None
Testis3 10 of 4 2.40None
Male accessory glands1 00 of 4 1.40None
Virgin spermatheca3 10 of 4 2.43None
Mated spermatheca2 00 of 4 1.55None
Adult carcass2 10 of 4 2.10None
Larval CNS1 10 of 4 1.41None
Larval Salivary gland1 00 of 4 1.04None
Larval midgut2 00 of 4 2.10None
Larval tubule3 11 of 4 2.60None
Larval hindgut1 10 of 4 1.29None
Larval fat body4 10 of 4 3.50None
Larval trachea2 20 of 4 1.80None
Larval carcass2 00 of 4 1.98None
S2 cells (growing)1 00 of 4 1.35None
Whole fly1 00 of 4

Looking for FBgn0085424. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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