Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085425 through 18771 annotations produced 2 hits



CG15654 (CG34396):

Annotation Number : CG15654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085425
Gbrowse : chr2R:16980004-16981425 (+) // 100.0 //
Probeset : 1640625_at
Accessions : protein= NP_001097392; /// NP_611547;, nucleotide= NM_001103922; /// NM_137703;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005252 // open rectifier potassium channel a
FlyMine data for FBgn0085425.
TRiP has 1 RNAi stocks for FBgn0085425 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10None
Head4 ± 10 of 4 0.80None
Eye0 ± 00 of 4 0.15None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10None
Salivary gland2 ± 00 of 4 0.39None
Crop35 ± 24 of 4 6.40Up
Midgut1 ± 00 of 4 0.30None
Tubule1 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.20None
Heart17 ± 04 of 4 3.22Up
Fat body1 ± 00 of 4 0.17None
Ovary0 ± 00 of 4 0.10None
Testis14 ± 14 of 4 2.60Up
Male accessory glands1 ± 00 of 4 0.20None
Virgin spermatheca1 ± 00 of 4 0.18None
Mated spermatheca1 ± 00 of 4 0.21None
Adult carcass7 ± 20 of 4 1.30None
Larval CNS0 ± 00 of 4 0.08None
Larval Salivary gland0 ± 00 of 4 0.16None
Larval midgut2 ± 00 of 4 0.41None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.22None
Larval fat body3 ± 10 of 4 0.60None
Larval trachea1 ± 20 of 4 0.32None
Larval carcass14 ± 12 of 4 2.66Up
S2 cells (growing)0 ± 00 of 4 0.08None
Whole fly5 ± 20 of 4



CG15654 (CG34396):

Annotation Number : CG15655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085425
Gbrowse : chr2R:16985556-16988756 (+) // 100.0 //
Probeset : 1635292_at
Accessions : protein= NP_001097392; /// NP_611547;, nucleotide= NM_001103922; /// NM_137703;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005252 // open rectifier potassium channel a
FlyMine data for FBgn0085425.
Homophila reports that CG15655 is a close match (5e-11) to human gene KCNK9;TASK3 (NP_057685), a gene associated with Birk-Barel mental retardation dysmorphism syndrome, 612292 (3).
BioGrid reports that CG15655 interacts with CG6045 CG5445 CG7123 .
TRiP has 1 RNAi stocks for FBgn0085425 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head26 ± 10 of 4 1.20None
Eye3 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.13Down
Crop89 ± 84 of 4 4.20Up
Midgut3 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut27 ± 20 of 4 1.30None
Heart75 ± 84 of 4 3.58Up
Fat body2 ± 00 of 4 0.10Down
Ovary0 ± 00 of 4 0.00Down
Testis55 ± 44 of 4 2.60Up
Male accessory glands18 ± 50 of 4 0.90None
Virgin spermatheca6 ± 20 of 4 0.32Down
Mated spermatheca6 ± 10 of 4 0.30Down
Adult carcass70 ± 40 of 4 3.40Up
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut6 ± 10 of 4 0.29Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut21 ± 40 of 4 1.00None
Larval fat body7 ± 30 of 4 0.40Down
Larval trachea4 ± 40 of 4 0.22Down
Larval carcass95 ± 94 of 4 4.56Up
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly21 ± 30 of 4

Looking for FBgn0085425. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime