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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085426 through 18771 annotations produced 4 hits



Rgk3 (Rgk3):

Annotation Number : CG15660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085426
Gbrowse : chr2R:17157805-17160002 (+) // 100.0 //
Probeset : 1627730_at
Accessions : protein= NP_001097395;, nucleotide= NM_001103925;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0085426.
VDRC has 4 RNAi stocks for FBgn0085426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.70None
Head1 ± 00 of 4 0.20Down
Eye3 ± 11 of 4 0.55None
Thoracicoabdominal ganglion4 ± 20 of 4 0.60None
Salivary gland17 ± 50 of 4 2.36None
Crop9 ± 30 of 4 1.30None
Midgut3 ± 00 of 4 0.50Down
Tubule3 ± 00 of 4 0.50Down
Hindgut2 ± 00 of 4 0.30Down
Heart4 ± 00 of 4 0.57Down
Fat body7 ± 40 of 4 1.03None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.40Down
Virgin spermatheca3 ± 00 of 4 0.41Down
Mated spermatheca2 ± 00 of 4 0.40Down
Adult carcass5 ± 20 of 4 0.80None
Larval CNS2 ± 10 of 4 0.32Down
Larval Salivary gland4 ± 00 of 4 0.58Down
Larval midgut12 ± 20 of 4 1.78None
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.61None
Larval fat body2 ± 00 of 4 0.30Down
Larval trachea9 ± 43 of 4 1.36None
Larval carcass8 ± 10 of 4 1.22None
S2 cells (growing)2 ± 00 of 4 0.28Down
Whole fly7 ± 00 of 4



Rgk3 (Rgk3):

Annotation Number : CT35843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085426
Gbrowse : chr2R:17151825-17152038 (+) // 100.0 //
Probeset : 1624315_at
Accessions : protein= NP_001097395;, nucleotide= NM_001103925;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0085426.
VDRC has 4 RNAi stocks for FBgn0085426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.10Up
Head0 ± 00 of 4 0.80None
Eye0 ± 00 of 4 0.71None
Thoracicoabdominal ganglion1 ± 00 of 4 1.00None
Salivary gland2 ± 10 of 4 2.74None
Crop2 ± 10 of 4 2.00None
Midgut1 ± 00 of 4 1.50None
Tubule0 ± 00 of 4 0.90None
Hindgut1 ± 00 of 4 1.20None
Heart1 ± 00 of 4 1.86None
Fat body1 ± 00 of 4 1.07None
Ovary1 ± 00 of 4 1.50None
Testis1 ± 00 of 4 1.20None
Male accessory glands1 ± 00 of 4 1.20None
Virgin spermatheca1 ± 00 of 4 1.26None
Mated spermatheca0 ± 00 of 4 0.67None
Adult carcass1 ± 00 of 4 1.80None
Larval CNS0 ± 00 of 4 0.43Down
Larval Salivary gland1 ± 00 of 4 1.07None
Larval midgut1 ± 00 of 4 1.62None
Larval tubule0 ± 00 of 4 0.50Down
Larval hindgut0 ± 00 of 4 0.64None
Larval fat body1 ± 00 of 4 1.40None
Larval trachea1 ± 20 of 4 1.83None
Larval carcass0 ± 00 of 4 0.83None
S2 cells (growing)0 ± 00 of 4 0.71None
Whole fly1 ± 00 of 4



March 2006 (FlyBase/BDGP 5.3) (chr2R:17165693-17167450 (+) // 100.0 //):

Annotation Number : CG15664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1630474_at
Accessions : protein= , nucleotide=
Interpro : 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transd


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 00 of 4 7.00Up
Head1 ± 00 of 4 1.40None
Eye5 ± 10 of 4 4.58None
Thoracicoabdominal ganglion1 ± 00 of 4 1.20None
Salivary gland4 ± 20 of 4 3.63None
Crop11 ± 00 of 4 8.60Up
Midgut6 ± 10 of 4 4.60None
Tubule2 ± 00 of 4 2.20Up
Hindgut8 ± 00 of 4 6.80Up
Heart9 ± 10 of 4 6.92Up
Fat body1 ± 00 of 4 1.08None
Ovary1 ± 00 of 4 1.00None
Testis3 ± 10 of 4 2.80None
Male accessory glands2 ± 00 of 4 2.10None
Virgin spermatheca9 ± 00 of 4 6.98Up
Mated spermatheca8 ± 10 of 4 6.29Up
Adult carcass6 ± 20 of 4 4.60None
Larval CNS0 ± 00 of 4 0.62None
Larval Salivary gland3 ± 10 of 4 2.90None
Larval midgut7 ± 00 of 4 5.90Up
Larval tubule4 ± 20 of 4 3.70None
Larval hindgut2 ± 00 of 4 2.00None
Larval fat body12 ± 00 of 4 9.40Up
Larval trachea3 ± 20 of 4 2.42None
Larval carcass11 ± 10 of 4 8.94Up
S2 cells (growing)0 ± 00 of 4 0.69None
Whole fly1 ± 00 of 4



Rgk3 (Rgk3):

Annotation Number : CG15663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085426
Gbrowse : chr2R:17163420-17164159 (+) // 100.0 //
Probeset : 1634605_at
Accessions : protein= NP_001097395;, nucleotide= NM_001103925;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0085426.
VDRC has 4 RNAi stocks for FBgn0085426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 3.20Up
Head4 ± 00 of 4 1.70None
Eye6 ± 11 of 4 2.79None
Thoracicoabdominal ganglion3 ± 10 of 4 1.50None
Salivary gland9 ± 20 of 4 3.97None
Crop3 ± 10 of 4 1.60None
Midgut1 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 0.80None
Hindgut3 ± 00 of 4 1.40None
Heart4 ± 20 of 4 1.96None
Fat body3 ± 30 of 4 1.44None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.50None
Male accessory glands2 ± 10 of 4 1.20None
Virgin spermatheca1 ± 00 of 4 0.66None
Mated spermatheca0 ± 00 of 4 0.35None
Adult carcass4 ± 30 of 4 2.10None
Larval CNS1 ± 00 of 4 0.76None
Larval Salivary gland1 ± 00 of 4 0.74None
Larval midgut2 ± 10 of 4 0.94None
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut3 ± 10 of 4 1.45None
Larval fat body3 ± 10 of 4 1.50None
Larval trachea2 ± 10 of 4 1.07None
Larval carcass2 ± 10 of 4 1.12None
S2 cells (growing)2 ± 00 of 4 0.93None
Whole fly2 ± 00 of 4

Looking for FBgn0085426. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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