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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085433 through 18771 annotations produced 2 hits



CG18496 (CG34404):

Annotation Number : CG6156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085433
Gbrowse : chr3R:11189500-11192502 (-) // 100.0 //
Probeset : 1623896_a_at
Accessions : protein= NP_650456; /// NP_650457; /// NP_732023;, nucleotide= NM_142199; /// NM_142200; /// NM_142200; /// NM_169651;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0085433.
BioGrid reports that CG6156 interacts with CG6315 CG7536 CG6156 CG6251 CG6333 CG6398 CG6607 CG6856 CG7014 CG7340 CG7622 CG7765 CG8590 CG9045 CG9354 CG9837 CG3661 .
VDRC has 6 RNAi stocks for FBgn0085433 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain526 ± 84 of 414.60Up
Head121 ± 64 of 4 3.40Up
Eye86 ± 54 of 4 2.38Up
Thoracicoabdominal ganglion470 ± 144 of 413.00Up
Salivary gland22 ± 43 of 4 0.62Down
Crop52 ± 44 of 4 1.40Up
Midgut25 ± 34 of 4 0.70Down
Tubule50 ± 34 of 4 1.40Up
Hindgut20 ± 24 of 4 0.60Down
Heart39 ± 24 of 4 1.10None
Fat body25 ± 24 of 4 0.70Down
Ovary31 ± 24 of 4 0.90None
Testis20 ± 14 of 4 0.60Down
Male accessory glands24 ± 23 of 4 0.70Down
Virgin spermatheca21 ± 13 of 4 0.59Down
Mated spermatheca19 ± 24 of 4 0.54Down
Adult carcass21 ± 24 of 4 0.60Down
Larval CNS331 ± 144 of 4 9.18Up
Larval Salivary gland35 ± 24 of 4 0.97None
Larval midgut35 ± 13 of 4 0.98None
Larval tubule64 ± 04 of 4 1.80Up
Larval hindgut51 ± 14 of 4 1.43Up
Larval fat body57 ± 54 of 4 1.60Up
Larval trachea48 ± 64 of 4 1.34Up
Larval carcass40 ± 34 of 4 1.12None
S2 cells (growing)160 ± 24 of 4 4.44Up
Whole fly36 ± 24 of 4



CG18496 (CG34404):

Annotation Number : CG18496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085433
Gbrowse : chr3R:11192832-11193156 (-) // 100.0 //
Probeset : 1633278_at
Accessions : protein= NP_650456; /// NP_650457; /// NP_732023;, nucleotide= NM_142199; /// NM_142200; /// NM_142200; /// NM_169651;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0085433.
VDRC has 6 RNAi stocks for FBgn0085433 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 34 of 425.00Up
Head2 ± 10 of 4 2.30None
Eye0 ± 00 of 4 0.86None
Thoracicoabdominal ganglion12 ± 40 of 411.40None
Salivary gland5 ± 20 of 4 5.36None
Crop5 ± 20 of 4 4.70None
Midgut3 ± 00 of 4 3.20Up
Tubule1 ± 00 of 4 0.90None
Hindgut1 ± 00 of 4 1.60None
Heart0 ± 00 of 4 0.68None
Fat body7 ± 50 of 4 6.55None
Ovary1 ± 00 of 4 1.20None
Testis3 ± 10 of 4 2.90None
Male accessory glands1 ± 00 of 4 1.70None
Virgin spermatheca2 ± 10 of 4 1.82None
Mated spermatheca0 ± 00 of 4 0.70None
Adult carcass1 ± 00 of 4 1.00None
Larval CNS8 ± 10 of 4 7.70Up
Larval Salivary gland1 ± 00 of 4 1.55None
Larval midgut5 ± 20 of 4 5.00None
Larval tubule3 ± 10 of 4 3.20None
Larval hindgut1 ± 00 of 4 1.34None
Larval fat body1 ± 00 of 4 1.50Up
Larval trachea0 ± 00 of 4 0.68None
Larval carcass1 ± 00 of 4 1.11None
S2 cells (growing)21 ± 20 of 419.68Up
Whole fly1 ± 00 of 4

Looking for FBgn0085433. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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