FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0085434 through 18771 annotations produced 2 hits

put. sodium channel gene (NaCP60E):

Annotation Number : CG9071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085434
Gbrowse : chr2R:20781692-20802640 (+) // 100.0 //
Probeset : 1637624_a_at
Accessions : protein= NP_726495;, nucleotide= NM_166696;
Pathway : 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005886 // plasma membrane //
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0085434.
Homophila reports that CG9071 is a close match (1e-64) to human gene CACNA1C;CACNL1A1;CCHL1A1;TS (NP_000710), a gene associated with Brugada syndrome 3, 611875 (3);Timothy syndrome, 601005 (3).
BioGrid reports that CG9071 interacts with CG9539 CG5053 CG3069 CG3937 CG5119 CG5738 CG6464 CG6509 CG8888 CG9035 CG9842 .
TRiP has 1 RNAi stocks for FBgn0085434 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085434 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 0	4 of 4	4.30	Up
Head	4 ± 0	0 of 4	1.60	None
Eye	2 ± 1	1 of 4	0.95	None
Thoracicoabdominal ganglion	8 ± 1	3 of 4	3.00	Up
Salivary gland	7 ± 2	0 of 4	2.45	None
Crop	4 ± 0	0 of 4	1.50	None
Midgut	5 ± 1	1 of 4	2.00	None
Tubule	2 ± 0	0 of 4	0.90	None
Hindgut	4 ± 2	1 of 4	1.60	None
Heart	1 ± 0	0 of 4	0.51	None
Fat body	4 ± 0	0 of 4	1.49	None
Ovary	3 ± 0	0 of 4	1.30	None
Testis	4 ± 0	2 of 4	1.40	None
Male accessory glands	7 ± 1	1 of 4	2.60	Up
Virgin spermatheca	2 ± 0	0 of 4	0.90	None
Mated spermatheca	2 ± 1	0 of 4	0.97	None
Adult carcass	1 ± 0	0 of 4	0.40	None
Larval CNS	3 ± 1	1 of 4	1.31	None
Larval Salivary gland	5 ± 2	1 of 4	1.91	None
Larval midgut	4 ± 1	0 of 4	1.51	None
Larval tubule	4 ± 1	0 of 4	1.40	None
Larval hindgut	3 ± 1	0 of 4	1.23	None
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	1 ± 0	0 of 4	0.68	None
Larval carcass	4 ± 0	0 of 4	1.66	None
S2 cells (growing)	6 ± 1	2 of 4	2.10	None
Whole fly	2 ± 0	0 of 4

put. sodium channel gene (NaCP60E):

Annotation Number : CG18506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085434
Gbrowse : chr2R:20802803-20807803 (+) // 100.0 //
Probeset : 1624241_at
Accessions : protein= NP_726495;, nucleotide= NM_166696;
Pathway : 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005886 // plasma membrane //
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0085434.
TRiP has 1 RNAi stocks for FBgn0085434 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085434 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	536 ± 40	4 of 4	36.50	Up
Head	40 ± 4	4 of 4	2.70	Up
Eye	14 ± 1	4 of 4	1.00	None
Thoracicoabdominal ganglion	336 ± 47	4 of 4	22.90	Up
Salivary gland	22 ± 2	4 of 4	1.54	None
Crop	13 ± 1	4 of 4	0.90	None
Midgut	12 ± 1	4 of 4	0.80	None
Tubule	7 ± 0	2 of 4	0.50	Down
Hindgut	18 ± 1	4 of 4	1.20	None
Heart	7 ± 1	2 of 4	0.49	Down
Fat body	14 ± 2	4 of 4	0.98	None
Ovary	4 ± 0	3 of 4	0.30	Down
Testis	3 ± 0	1 of 4	0.30	Down
Male accessory glands	21 ± 2	4 of 4	1.40	None
Virgin spermatheca	14 ± 2	4 of 4	1.00	None
Mated spermatheca	13 ± 1	4 of 4	0.93	None
Adult carcass	18 ± 3	3 of 4	1.30	None
Larval CNS	53 ± 3	4 of 4	3.66	Up
Larval Salivary gland	7 ± 1	1 of 4	0.48	Down
Larval midgut	7 ± 1	2 of 4	0.52	Down
Larval tubule	8 ± 0	3 of 4	0.60	Down
Larval hindgut	9 ± 0	4 of 4	0.65	None
Larval fat body	6 ± 0	0 of 4	0.40	Down
Larval trachea	16 ± 1	4 of 4	1.13	None
Larval carcass	10 ± 0	4 of 4	0.69	None
S2 cells (growing)	20 ± 2	4 of 4	1.42	None
Whole fly	14 ± 1	4 of 4

Looking for FBgn0085434. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720